View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16549_high_59 (Length: 231)

Name: NF16549_high_59
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16549_high_59
NF16549_high_59
[»] chr2 (4 HSPs)
chr2 (16-217)||(36095475-36095675)
chr2 (87-196)||(12023724-12023834)
chr2 (132-195)||(40100528-40100591)
chr2 (105-190)||(38764213-38764298)
[»] chr3 (5 HSPs)
chr3 (98-196)||(32324563-32324662)
chr3 (69-170)||(5404449-5404551)
chr3 (69-181)||(34964184-34964297)
chr3 (69-196)||(34199083-34199209)
chr3 (73-160)||(41904878-41904966)
[»] chr1 (2 HSPs)
chr1 (98-196)||(50414516-50414614)
chr1 (124-192)||(38753637-38753705)
[»] chr4 (5 HSPs)
chr4 (73-198)||(56576422-56576545)
chr4 (144-195)||(6418781-6418832)
chr4 (137-196)||(48190725-48190784)
chr4 (73-160)||(53380956-53381043)
chr4 (154-195)||(19195630-19195671)
[»] chr8 (1 HSPs)
chr8 (100-196)||(34195093-34195189)
[»] chr7 (1 HSPs)
chr7 (107-196)||(24890484-24890573)
[»] chr6 (3 HSPs)
chr6 (105-198)||(22506294-22506387)
chr6 (102-159)||(4003963-4004020)
chr6 (73-157)||(5455658-5455742)
[»] scaffold0034 (1 HSPs)
scaffold0034 (105-159)||(92601-92655)
[»] chr5 (1 HSPs)
chr5 (147-197)||(33179448-33179498)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 36095675 - 36095475
Alignment:
Q  16 tgaatgatataagttgtggcctggtttggaagttcagtagtagtattttggtctttggtgttaatcctttggttcataggggaagggggcctagtaatct 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36095675 tgaatgatatatgttgtggcctggtttggaagttcagtagtagtattttggtctttggtgttaatcctttggttcataggggaagggggcctagtaatct 36095576  T
Q  116 ggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaacgattcatgtgtgttagcagtagta 215  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  36095575 ggagttcggctgggaggtaagtaaagtctggccaagaattgttcccaccaggaattgaacttgggttctcccgaacgattcatgtgt-ttagcagtagta 36095477  T
Q  216 tg 217  Q
    ||    
T  36095476 tg 36095475  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 12023724 - 12023834
Alignment:
Q  87 gttcataggggaagggggc-ctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctc 185  Q
    |||| |||||||||||||| |||||||||||||||||||    || |||| || || ||| ||||||||||||||  |||||||| |||||||||| |||    
T  12023724 gttcctaggggaagggggctctagtaatctggagttcggtcatgaggtaagtacagcctgaccaagaattgttccacccaggaatcgaactcgggtcctc 12023823  T
Q  186 ccgaacgattc 196  Q
    |||||| ||||    
T  12023824 ccgaacaattc 12023834  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 40100528 - 40100591
Alignment:
Q  132 gtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaacgatt 195  Q
    |||| ||||||||||||||||||||||||  || |||||||||||||||||||||  |||||||    
T  40100528 gtaagtaaagtctggccaagaattgttccaccctggaattgaactcgggttctccacaacgatt 40100591  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 38764213 - 38764298
Alignment:
Q  105 cctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaa 190  Q
    |||||||||| ||||||| | ||||| |||| |||||||||| ||||||||||| |  ||| |||| ||| |||||||||||||||    
T  38764213 cctagtaatccggagttcagttgggaggtaagtaaagtctggtcaagaattgttgcacccaagaatcgaattcgggttctcccgaa 38764298  T

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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 32324563 - 32324662
Alignment:
Q  98 aagggggcctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcggg-ttctcccgaacgattc 196  Q
    |||||| |||||||||| |||||| ||| |||| |||| ||||| ||||||||||||||||||||||||||||  |||||||| ||||||||||||||||    
T  32324563 aaggggccctagtaatccggagtttggccgggaggtaagtaaagcctggccaagaattgttcccaccaggaatcaaactcgggtttctcccgaacgattc 32324662  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 5404551 - 5404449
Alignment:
Q  69 tttggtgttaatcctttggttcataggggaagggggcct-agtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccagg 167  Q
    ||||||||||| |||  ||| | |||||||||||| ||| ||||||| ||||||| ||||| | |||| |||||||||||||| ||||||||||| ||||    
T  5404551 tttggtgttaaccctccggtgcctaggggaaggggcccttagtaatccggagttcagctggcaggtaagtaaagtctggccaataattgttcccatcagg 5404452  T
Q  168 aat 170  Q
    |||    
T  5404451 aat 5404449  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 34964297 - 34964184
Alignment:
Q  69 tttggtgttaatcctttggttcataggggaagggggcc-tagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccagg 167  Q
    ||||| ||||| |||  ||||| |||||||| || ||| ||||||  |||||||||||||||| |||| |||||||||| ||| |||||||||||  |||    
T  34964297 tttggagttaaccctccggttcctaggggaaaggtgccatagtaagttggagttcggctgggaggtaagtaaagtctggtcaataattgttcccattagg 34964198  T
Q  168 aattgaactcgggt 181  Q
    ||| ||||||||||    
T  34964197 aatcgaactcgggt 34964184  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 196
Target Start/End: Original strand, 34199083 - 34199209
Alignment:
Q  69 tttggtgttaatcctttggttcataggggaagggggcctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccagga 168  Q
    |||| |||||| |||  ||||| | |||||||||| |||||| |||  ||||||||| |||| |||| ||||  ||||||||||||||||||   |||||    
T  34199083 tttgctgttaaccctccggttccttggggaaggggccctagtgatccagagttcggccgggaggtaagtaaatcctggccaagaattgttccacacagga 34199182  T
Q  169 attgaactcgggttctcccgaacgattc 196  Q
    || ||| ||| |||||||| ||||||||    
T  34199183 atcgaa-tcgagttctcccaaacgattc 34199209  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 41904878 - 41904966
Alignment:
Q  73 gtgttaatcctttggttcataggggaagggggc-ctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcc 160  Q
    ||||||| |||| ||||| | |||||  ||||| ||||||||| |||||| ||||| ||  ||| |||||||||| |||||||||||||    
T  41904878 gtgttaacccttcggttcttgggggagaggggcgctagtaatccggagtttggctgcgagctaaataaagtctggtcaagaattgttcc 41904966  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 50414516 - 50414614
Alignment:
Q  98 aagggggcctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaacgattc 196  Q
    |||||| |||||||||| | ||||||||  ||| ||||  ||||||| |||||||||||||||  |||||||||||||||||||||||| |||| ||||    
T  50414516 aaggggccctagtaatccgtagttcggccaggaggtaagaaaagtctagccaagaattgttccacccaggaattgaactcgggttctcctgaacaattc 50414614  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 38753705 - 38753637
Alignment:
Q  124 gctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaacg 192  Q
    ||||||| |||| ||||||| ||||||| ||| ||||   ||||||| |||||||||||||||||||||    
T  38753705 gctgggaggtaagtaaagtccggccaaggatttttccagtcaggaatcgaactcgggttctcccgaacg 38753637  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 56576545 - 56576422
Alignment:
Q  73 gtgttaatcctttggttcataggggaagggggcctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattg 172  Q
    ||||||| |||  ||||||||||||| |||| |||||||| | |||||||||| |||| |||| |||||| |||| | ||||| ||||||||||| ||      
T  56576545 gtgttaaccctccggttcataggggacgggg-cctagtaacccggagttcggccgggaggtaagtaaagtttggcta-gaattattcccaccaggtatca 56576448  T
Q  173 aactcgggttctcccgaacgattcat 198  Q
    ||||||||||||| ||||||||||||    
T  56576447 aactcgggttctctcgaacgattcat 56576422  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 6418781 - 6418832
Alignment:
Q  144 tggccaagaattgttcccaccaggaattgaactcgggttctcccgaacgatt 195  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  6418781 tggccaagaattgttccacacaggaattgaactcgggttctcccgaacgatt 6418832  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 48190784 - 48190725
Alignment:
Q  137 taaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaacgattc 196  Q
    ||||||||||||| ||||||||||  | ||||||  ||||||||||||||||||||||||    
T  48190784 taaagtctggccaggaattgttccacctaggaatcaaactcgggttctcccgaacgattc 48190725  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 53381043 - 53380956
Alignment:
Q  73 gtgttaatcctttggttcataggggaagggggcctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcc 160  Q
    ||||||| |||  ||||| ||||||||  |||||| |||||| | |||| ||| |||| |||| ||||| ||||||||||||||||||    
T  53381043 gtgttaaccctccggttcttaggggaaaagggcctggtaatccgtagtttggccgggaggtaagtaaagcctggccaagaattgttcc 53380956  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 19195630 - 19195671
Alignment:
Q  154 ttgttcccaccaggaattgaactcgggttctcccgaacgatt 195  Q
    |||||||  |||||||| ||||||||||||||||||||||||    
T  19195630 ttgttccacccaggaatcgaactcgggttctcccgaacgatt 19195671  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 34195093 - 34195189
Alignment:
Q  100 gggggcctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaacgattc 196  Q
    |||| ||| |||||||||||| | || |||| |||| ||||| |||||||| ||||||||| |  ||||||||||||||||||||||| ||||||||    
T  34195093 ggggccctggtaatctggagtacagccgggaggtaagtaaagcctggccaaaaattgttcctagtaggaattgaactcgggttctcccaaacgattc 34195189  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 24890573 - 24890484
Alignment:
Q  107 tagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaacgattc 196  Q
    ||||||||| |||| ||||| | | |||| ||||||||| ||||||||||||||||  ||||||  |||||||||||||| ||| |||||    
T  24890573 tagtaatctagagtccggctagaaggtaagtaaagtctgaccaagaattgttcccattaggaatcaaactcgggttctcctgaaagattc 24890484  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 22506387 - 22506294
Alignment:
Q  105 cctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaacgattcat 198  Q
    |||||||| | |||||||||| | || ||||  | ||||||||||| ||||||||| || |||||| |||||||| ||||||| ||| ||||||    
T  22506387 cctagtaacccggagttcggcagtgaggtaaggatagtctggccaataattgttccaactaggaatcgaactcggcttctcccaaacaattcat 22506294  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 4004020 - 4003963
Alignment:
Q  102 gggcctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttc 159  Q
    ||||||||||||| ||||||||||  ||| |||| ||| |||||||||| ||||||||    
T  4004020 gggcctagtaatccggagttcggccaggaggtaagtaaggtctggccaataattgttc 4003963  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 157
Target Start/End: Complemental strand, 5455742 - 5455658
Alignment:
Q  73 gtgttaatcctttggttcataggggaagggggcctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgt 157  Q
    |||||||||||||||||| ||||| |||||| | ||||||||  ||||||| | |||| |||| |||| | || ||| |||||||    
T  5455742 gtgttaatcctttggttcctagggaaaggggtcttagtaatcaagagttcgtccgggaggtaaataaaatatgaccatgaattgt 5455658  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 92601 - 92655
Alignment:
Q  105 cctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttc 159  Q
    |||| ||||||||||||||| || || |||| |||||||||||||| ||||||||    
T  92601 cctaataatctggagttcggttgagaggtaagtaaagtctggccaaaaattgttc 92655  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 33179498 - 33179448
Alignment:
Q  147 ccaagaattgttcccaccaggaattgaactcgggttctcccgaacgattca 197  Q
    |||||||||||| ||| ||||||| |||||||| |||||| ||||||||||    
T  33179498 ccaagaattgtttccatcaggaatcgaactcggcttctcctgaacgattca 33179448  T

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