View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_high_6 (Length: 707)
Name: NF16549_high_6
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 556; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 16 - 689
Target Start/End: Complemental strand, 34872487 - 34871812
Alignment:
| Q |
16 |
atggaggtagaggcgagcaactctctcaaggggaatagggtggagcctgttgacaaagggaagaatgtgcccgtcaaagttgtgcctcttcggtctgagg |
115 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
34872487 |
atggaggtagaggtgagcaactctctcaaggggaatagggtggagcctgttgacaaagggaagaatgtgcccgtcaaagttgtgcctcttcagtctcagg |
34872388 |
T |
|
| Q |
116 |
gagaggatctgctccagctgttgaacgtgcggtccgatcctgatcgatatggcccccactcgaccatttgccgcagtgatctaaagctgaaggttattca |
215 |
Q |
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|||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34872387 |
gagaggatttgctccaactgttgaacgtgtggtccgatcctgatcgatatggcccccactcgaccatttgccgcagtgatctaaagctgaaggttattca |
34872288 |
T |
|
| Q |
216 |
agacctgggaaccgctggccggggtaaaactgcaatgactaaaggttattcaaagtgtctacatatgcatcatgagttcttctcctaaaattttcaatta |
315 |
Q |
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|||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34872287 |
agacctgggaaccgctggccggagcaaaactgcaatgactgaaggttattcaaagtgtctacatatgcatcatgagttcttttcctaaaattttcaatta |
34872188 |
T |
|
| Q |
316 |
tgtgtggg--ctatttaccgtgtcctatagnnnnnnnattttgacgtttctccgtgcctattttatcacatgtcaaagtcaacattaatgcttcacatgt |
413 |
Q |
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|||||| | |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34872187 |
tgtgtgtgtgctatttaccgtgtcctgcagtttttttattttgacgtttctccgtgcctattttatcacatgtcaaagtcaacatcaatgcttcacatgt |
34872088 |
T |
|
| Q |
414 |
tatagtaaatatatattcaaacaagaatcaaatatcataatcataacgataaaacacaagatgaagcaaaaagacaatgaaaaatgcatttataaatcag |
513 |
Q |
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| T |
34872087 |
tatagtaaatatatatttaaacaagaatcaaatatcataatcataacgataaaacacaagatggagcacaaagacaatgaaaaatgcatttataaatcag |
34871988 |
T |
|
| Q |
514 |
ctgaggaaagaaacatcatggattgcaagacttaactattgttttcattttgcaggaaatgatgaaaagcaaccatcgcagcaaactcttgagatgcctt |
613 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34871987 |
ttgaggaaagaaacatcatggattgcaagacttaactgttgttttcattttgcaggaaatgatgaaaagcaaccatcgcagcaaactcttgagatgcctt |
34871888 |
T |
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| Q |
614 |
aagggtgcttgctagttctggtgaagtgaaggaaatagacttaacggtaacggttgatgagaaaagaggattgtgc |
689 |
Q |
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| T |
34871887 |
aagggtgcttgctggttttggtgaagtgaaggaaatagacttaacggtaacggttgatgaaaaaagaggattgtgc |
34871812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 270 - 689
Target Start/End: Original strand, 34873391 - 34873812
Alignment:
| Q |
270 |
gtgtctacatatgcatcatgagttcttctcctaaaattttcaattatgtgtgggc--tatttaccgtgtcctatagnnnnnnnattttgacgtttctccg |
367 |
Q |
| |
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|||||||||||||||||| |||||||| | ||||||||| ||||||||||| || |||||||| ||||||| || |||||||||||||| || |
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| T |
34873391 |
gtgtctacatatgcatcacgagttcttttattaaaatttttaattatgtgtgtgcactatttaccatgtcctacagtttttttattttgacgtttctgcg |
34873490 |
T |
|
| Q |
368 |
tgcctattttatcacatgtcaaagtcaacattaatgcttcacatgttatagtaaatatatattcaaacaagaatcaaatatcataatcataacgataaaa |
467 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34873491 |
tgcctattttatcacatgtcaaagtcaacatcaatgcttcacaggttatagtaaatatatattctaacaagaatcaaatatcataatcataacgataaaa |
34873590 |
T |
|
| Q |
468 |
cacaagatgaagcaaaaagacaatgaaaaatgcatttataaatcagctgaggaaagaaacatcatggattgcaagacttaactattgttttcattttgca |
567 |
Q |
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| T |
34873591 |
cacaagatggagcacaaagacaatgaaaaatgcatttatatatcagttgaggaaagaaacatcatagattgcaagacttaactggtgttttcattttgca |
34873690 |
T |
|
| Q |
568 |
ggaaatgatgaaaagcaaccatcgcagcaaactcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatagacttaacggtaacggt |
667 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
34873691 |
ggaaatgatgaaaagcaaccatcgcaacaaactcttgagatgccttaagggtgcttgcaggttctggtgaagtgaaggaaatggacttaacggtaacggt |
34873790 |
T |
|
| Q |
668 |
tgatgagaaaagaggattgtgc |
689 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
34873791 |
tgatgagaaaagaggattgtgc |
34873812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 353 - 505
Target Start/End: Complemental strand, 9918868 - 9918716
Alignment:
| Q |
353 |
tttgacgtttctccgtgcctattttatcacatgtcaaagtcaacattaatgcttcacatgttatagtaaatatatattcaaacaagaatcaaatatcata |
452 |
Q |
| |
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||||| ||||||| ||||||||||| ||||||||||||| ||||| | || |||| | |||||||||||||||||||||||||||||||||||| |||| |
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| T |
9918868 |
tttgatgtttctctgtgcctattttgtcacatgtcaaagccaacaccattgtttcataagttatagtaaatatatattcaaacaagaatcaaatagcata |
9918769 |
T |
|
| Q |
453 |
atcataacgataaaacacaagatgaagcaaaaagacaatgaaaaatgcattta |
505 |
Q |
| |
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|||||||||||||||||||||||| |||| |||||||| |||||||||||||| |
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| T |
9918768 |
atcataacgataaaacacaagatggagcacaaagacaacgaaaaatgcattta |
9918716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 570 - 688
Target Start/End: Complemental strand, 9911247 - 9911129
Alignment:
| Q |
570 |
aaatgatgaaaagcaaccatcgcagcaaactcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatagacttaacggtaacggttg |
669 |
Q |
| |
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|||||||||||||||||||| |||||| | |||||||| ||||| ||||| |||| |||| || |||| ||||||||| || ||||| |||||||||| |
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| T |
9911247 |
aaatgatgaaaagcaaccatggcagcagaatcttgagacagcttaatggtgcgtgctggttcaggagaagagaaggaaatggagttaacagtaacggttg |
9911148 |
T |
|
| Q |
670 |
atgagaaaagaggattgtg |
688 |
Q |
| |
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||||||| ||| |||||| |
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| T |
9911147 |
ttgagaaacgagaattgtg |
9911129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 34874981 - 34875017
Alignment:
| Q |
278 |
atatgcatcatgagttcttctcctaaaattttcaatt |
314 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| |
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| T |
34874981 |
atatgcatcatgagttcttttcctaaaattttcaatt |
34875017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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