View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_11 (Length: 546)
Name: NF16549_low_11
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 526
Target Start/End: Complemental strand, 1077258 - 1076756
Alignment:
| Q |
18 |
gatgcattatacttttcctttttgaaagaatttaagaacatggttacgttgtttatacgtcgttaagtgtgggtctttggaatgatttgaggcaacgagg |
117 |
Q |
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| T |
1077258 |
gatgcattatacttttcctttttgaaagaatttaagaacatggttacgttgtttatacgtcgttaagtgtgggtctttggaatgatttgaggcaacgagg |
1077159 |
T |
|
| Q |
118 |
aaagaaaaaatgggaatatatatttgaatagtcaaaatatactcgtaaaggaaagaattgtatagtagccaatactgaagagttttgagccacacatggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1077158 |
aaagaaaaaatgggaatatatatttgaatagtcaaaatatactcgtaaaggaaagaattgtatagtagccaatactgaagagttttgagccacacatggt |
1077059 |
T |
|
| Q |
218 |
aattgcttgtatcttctaaatttaagcnnnnnnnnnnnnnnnnnnntggacccacgatttaggatatgtaaagtctttatttaatcgtgtcttccatatt |
317 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1077058 |
aattgcgtgtatcttctaaatttaagcaaaaaaagaaaaa------tggacccacgatttaggatatgtaaagtctttatttaattgtgtcttccatatt |
1076965 |
T |
|
| Q |
318 |
tgggtattgacaacctacaagatatagcatcttcatcagtggtatctaagcggaaccaacattcttggattcaataaggatatcatgaaatgggattact |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1076964 |
tgggtattgacaacctacaagatatagcatcttcatcagtggtatctaagcggaaccaacattcttggattcaataaggatatcatgaaatgggattact |
1076865 |
T |
|
| Q |
418 |
tggataagcattttctttgacatatcattctaaggttgagatacaaagtttgtgaaatttttctgattaatttgattttaaaacatgttaaaataccatt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1076864 |
tggataagcattttctttgacatatcattctaaggttgagatacaaagtttgtgaaatttttctgattaatttgattttaaaacatgttaaaataccatt |
1076765 |
T |
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| Q |
518 |
aaaggtatg |
526 |
Q |
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| T |
1076764 |
aaaggtatg |
1076756 |
T |
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