View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_13 (Length: 519)
Name: NF16549_low_13
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 7e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 22735946 - 22735771
Alignment:
| Q |
17 |
atgaatctccacggagatccgccgctgcccaaaacaatgataactctttctctctttaatcaagcactttactctttcgctaaaaacaccttgaagttat |
116 |
Q |
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| T |
22735946 |
atgaatctccacggagatccaccgctgcccagaacaatgataactctttctctttttaatcaagcactttactctttcgctaaaaa------gaagttat |
22735853 |
T |
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| Q |
117 |
gtttgtaaacttatcaatcaaaaatgtattttatagtctaggaatctaaagacgaagttcctcaattgttatttccaaaatc |
198 |
Q |
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| T |
22735852 |
gtttgtaaacttatcaatcaaaaatgtattttatagtctaggaatctaaagaagaagttcctcaattgttatttccaaaatc |
22735771 |
T |
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Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 22735715 - 22735563
Alignment:
| Q |
194 |
aaatcttgaatgttaatgtgtgcgtaaaatgtgacattttaaacatattttcaaaaagaaattttataatctagtttgcaaccgttgtgaacttatttca |
293 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22735715 |
aaatcttgaatgttaatgtgtgcgtaaaatgtgatattttaaacatattttcaaaaagaaattttataatctagtttgcaaccgttgtgaacctatttca |
22735616 |
T |
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| Q |
294 |
aaattagtgcattttaccttctattttaatctggggtgtcataagaaaccctt |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22735615 |
aaattagtgcattttaccttctattttaatctggggtgtcataagaaatcctt |
22735563 |
T |
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