View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_14 (Length: 508)
Name: NF16549_low_14
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 9298674 - 9298957
Alignment:
| Q |
13 |
atgaaatgaaatcaaacctatgaaagtgtatgtatagtccatggaagcatataattggggggaatgaagcctggtccgagaatactttacaatccatgac |
112 |
Q |
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| T |
9298674 |
atgaaatgaaatcaaacctatgaaagtgtatgtatagtccatggaagcatataattggggggaatgaagcctggtccgagaatactttacaatccatgac |
9298773 |
T |
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| Q |
113 |
cacaaatttgcattagatcgagaagaaagcgtcctcgagccagacaacattcccctcaaaaaataaagcttcccaatagtctttttcttagagttttgta |
212 |
Q |
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| T |
9298774 |
cacaaatttgcattagatcgagaagaaagcgtcctcgagccagacaacattcccctcaaaaaataaagcttcccaatagtctttttcttagagttttgta |
9298873 |
T |
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| Q |
213 |
atggt--cacacacacactttgtgttctcttttgaactcttgattcatcccccaaaagtctcggctaccttcaagggggagtta |
294 |
Q |
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| T |
9298874 |
atggtcacacacacacactttgtgttctcttttgaactcttgattcatcccccaaaagtctcggctaccttcaagggggagtta |
9298957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 419 - 490
Target Start/End: Original strand, 9299082 - 9299153
Alignment:
| Q |
419 |
attggggcagagtgtgtgagtagaccctaccagctgggttcctcacttccagaaatgaccacgaccccatgc |
490 |
Q |
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| T |
9299082 |
attggggcagagtgtgtgagtagaccctaccagctgggttcctcacttccagaaatgaccacgaccccatgc |
9299153 |
T |
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