View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_15 (Length: 501)
Name: NF16549_low_15
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 2 - 485
Target Start/End: Complemental strand, 3163632 - 3163149
Alignment:
| Q |
2 |
gaagaggaaaaggaaggattgtggaagaaatattatggaagcggcaagtttagaagaaagtgacttattagatgcagttgatgttatgtcctggcgtaaa |
101 |
Q |
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| T |
3163632 |
gaagagaaaaaggaaggattgtggaagaaatattatggaagcggcaagtttagaagaaagtgacttattagatgcagttgatgttatgtcctggcgtaaa |
3163533 |
T |
|
| Q |
102 |
gaaagttctactagtaactgtggtgaagttgccaaatcttctgctgatgtagacaatnnnnnnngtaagaaccnnnnnnngcatagcgcggaagatatga |
201 |
Q |
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| T |
3163532 |
gaaagttctactagtaactgtggtgatgttgccaaatcttctgctgatgtagacaataaaaaaagtaagaacccaaaaaagcatagcgcggaagatatga |
3163433 |
T |
|
| Q |
202 |
ttaagattttagattctatttttgaaactgaaggtgcatctgccttccgtcgaagacttgatggtcaggtatgtgtaattagagtctcatcttgttcatt |
301 |
Q |
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| T |
3163432 |
ttaagattttagattctatttttgaaactgaaggtgcatctgccttccgtcgaagacttgatggtcaggtatgtgtaattagagtctcatcttgttcatt |
3163333 |
T |
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| Q |
302 |
tgtagttagtttctgagttttcttctctccataaagcttttgatgctagctctattagtttcttagatgctagctctatcagtttcttagatgaaaaaag |
401 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3163332 |
tgcagttagtttctgagttttcttctctccataaagcttttgatgctagctctattagtttcttagatgctagctctatcagtttcttagatgaaaaaag |
3163233 |
T |
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| Q |
402 |
attttgatttttacctatgatggttagtttgttagagatggttgtttgatgttctctagggtgtgcttgttatggtcaaaatat |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3163232 |
attttgatttttacctatgatggttagtttgttagagatgtttgtttgatgttctctagggtgtgcttgttatggtcaaaatat |
3163149 |
T |
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