View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_17 (Length: 494)
Name: NF16549_low_17
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_17 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 14 - 479
Target Start/End: Original strand, 2758149 - 2758614
Alignment:
| Q |
14 |
gaaaagaacaggaatacatcccgatattagtgaatcaaacaccgattttctcgttggactatctcccggtggctgcaagcaaaactcagattccacaaaa |
113 |
Q |
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| T |
2758149 |
gaaaagaacaggaatacatcccgatattagtgaatcaaacaccgattttctcgttggactatctcccggtggctgcaagcaaaactcagattccacaaaa |
2758248 |
T |
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| Q |
114 |
agttctataattgattctggctcattacatttagcagaactacaattcagaaacttgcatttaccgtcacttttggaactgcattggtcgattaatatcg |
213 |
Q |
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| T |
2758249 |
agttctataattgattctggctcattacatttagcagaactacaattcagaaacttgcatttaccgtcactttcggaactgcattggttgattaatatcg |
2758348 |
T |
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| Q |
214 |
accttatgtgatcatccgcatgatcccgcgccgcgcctgcaaaacttacaaggttcctccggttcgaccttatgattttcagctgccaatcgattatatc |
313 |
Q |
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| T |
2758349 |
accttatgtgatcatccgcatgatcccgcgctgcgcctgcaaaacttacaaggttcctccggttcgaccttatgattttcagctgccaatcgattatatc |
2758448 |
T |
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| Q |
314 |
gttgtctgatttcggatgaaaataagtcggatgaggaattccaatgtcgttcacatgccacggttggcgttcaatcaatagtttaatcggattttgaagt |
413 |
Q |
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| T |
2758449 |
gttgtctgatttcggatgaaaataagttggatgaggaattccaatgtcgttcacatgccacggttggcgttcgatcaatagtttaatcggattttgaagt |
2758548 |
T |
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| Q |
414 |
ttttcgagctctaacaatctacttccccaaggagaatcactagtccttctaaaatcccaagaaatt |
479 |
Q |
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| T |
2758549 |
ttttcgagctctaacaatctagttccccaaggagaatcactagtccttctaaaatcccaagaaatt |
2758614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 479
Target Start/End: Original strand, 2754188 - 2754653
Alignment:
| Q |
14 |
gaaaagaacaggaatacatcccgatattagtgaatcaaacaccgattttctcgttggactatctcccggtggctgcaagcaaaactcagattccacaaaa |
113 |
Q |
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||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| |
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| T |
2754188 |
gaaaagaaccggaatacatcccgatatcagcgaatcaaaaaccgattttctcgttggactatctcccggtggctgtaaacaaaactcagactccacaaaa |
2754287 |
T |
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| Q |
114 |
agttctataattgattctggctcattacatttagcagaactacaattcagaaacttgcatttaccgtcacttttggaactgcattggtcgattaatatcg |
213 |
Q |
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| T |
2754288 |
agttccataattgattctggctcagaacatttaacagaactacaatttagaaacttgcatttaccttcacttttcgaactgcattggttgatcaatatcg |
2754387 |
T |
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| Q |
214 |
accttatgtgatcatccgcatgatcccgcgccgcgcctgcaaaacttacaaggttcctccggttcgaccttatgattttcagctgccaatcgattatatc |
313 |
Q |
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| T |
2754388 |
accttatatggtcatccgcatcatccctcgccgctccggcaaaacttacaaggttcttccgattcgatcttatgattttcagctgccaatcaattatatc |
2754487 |
T |
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| Q |
314 |
gttgtctgatttcggatgaaaataagtcggatgaggaattccaatgtcgttcacatgccacggttggcgttcaatcaatagtttaatcggattttgaagt |
413 |
Q |
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| T |
2754488 |
attgtccgatttcggatgaaaaaaagttggatgaggaactccaatgtcgttcaaatgccacggctggcgttcgatcaataacttaattggattttgaaat |
2754587 |
T |
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| Q |
414 |
ttttcgagctctaacaatctacttccccaaggagaatcactagtccttctaaaatcccaagaaatt |
479 |
Q |
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| T |
2754588 |
tcatcgagctttaacaatctagttccccaaggagaatcactagtccttctaaaatcccaagaaatt |
2754653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 382 - 471
Target Start/End: Original strand, 60746 - 60835
Alignment:
| Q |
382 |
gttcaatcaatagtttaatcggattttgaagtttttcgagctctaacaatctacttccccaaggagaatcactagtccttctaaaatccc |
471 |
Q |
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| T |
60746 |
gttcaatcaatacttcaatgggattttgcaatttttcaagctctaacaatctagttccccaaggagaatcgtcagtccttctaaaatccc |
60835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 472
Target Start/End: Complemental strand, 18300139 - 18300080
Alignment:
| Q |
413 |
tttttcgagctctaacaatctacttccccaaggagaatcactagtccttctaaaatccca |
472 |
Q |
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| T |
18300139 |
tttttcaagctctaacaatctagttccccaaggagaatcgtcagtccttctaaaatccca |
18300080 |
T |
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