View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16549_low_18 (Length: 487)

Name: NF16549_low_18
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16549_low_18
NF16549_low_18
[»] scaffold0115 (2 HSPs)
scaffold0115 (11-469)||(4898-5356)
scaffold0115 (11-469)||(12638-13096)
[»] chr1 (16 HSPs)
chr1 (11-473)||(19344410-19344880)
chr1 (28-224)||(13543394-13543590)
chr1 (28-224)||(13670554-13670750)
chr1 (28-224)||(15899066-15899262)
chr1 (28-116)||(13420896-13420984)
chr1 (28-221)||(13655150-13655343)
chr1 (38-224)||(13684810-13684996)
chr1 (28-224)||(20477522-20477718)
chr1 (38-224)||(13650088-13650274)
chr1 (27-92)||(16497144-16497209)
chr1 (297-358)||(13670828-13670889)
chr1 (293-358)||(19138033-19138098)
chr1 (297-349)||(13655424-13655476)
chr1 (293-349)||(13685070-13685126)
chr1 (293-349)||(15898936-15898992)
chr1 (297-349)||(20477796-20477848)
[»] chr4 (1 HSPs)
chr4 (11-217)||(8480020-8480226)
[»] chr3 (1 HSPs)
chr3 (227-303)||(328164-328240)
[»] scaffold0006 (8 HSPs)
scaffold0006 (28-224)||(168168-168364)
scaffold0006 (28-221)||(144911-145104)
scaffold0006 (28-224)||(218759-218955)
scaffold0006 (28-116)||(109919-110007)
scaffold0006 (297-358)||(110193-110254)
scaffold0006 (297-358)||(168442-168503)
scaffold0006 (297-358)||(219033-219094)
scaffold0006 (297-349)||(145185-145237)
[»] scaffold0069 (1 HSPs)
scaffold0069 (28-224)||(26548-26744)
[»] chr6 (2 HSPs)
chr6 (28-224)||(22283918-22284114)
chr6 (300-348)||(21814714-21814762)
[»] scaffold0068 (2 HSPs)
scaffold0068 (28-224)||(40858-41054)
scaffold0068 (296-358)||(40719-40781)
[»] chr2 (1 HSPs)
chr2 (28-224)||(38057711-38057907)
[»] scaffold0406 (2 HSPs)
scaffold0406 (28-116)||(7799-7887)
scaffold0406 (297-358)||(7554-7615)
[»] chr8 (1 HSPs)
chr8 (28-224)||(20814675-20814871)
[»] scaffold0012 (4 HSPs)
scaffold0012 (28-224)||(115768-115964)
scaffold0012 (297-349)||(116042-116094)
scaffold0012 (297-358)||(108225-108286)
scaffold0012 (28-116)||(107951-108039)


Alignment Details
Target: scaffold0115 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 11 - 469
Target Start/End: Complemental strand, 5356 - 4898
Alignment:
Q  11 cataggttcgactctccaaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5356 cataggttcgactatccaaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccatcagtttgactcattgaagacgttgaa 5257  T
Q  111 agtgaataaatgtgacaaaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5256 agtgaataaatgtgacaaaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtg 5157  T
Q  211 gaagagatatttgattccaatgaaaaggggaagtaaagaggatgcaacaaatctgaaagaaatcactttgagtgaaatgccaaagctgaaaaatatatgt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5156 gaagagatatttgattccaatgaaaaggggaagtaaagaggatgcaacaaatctgaaagaaatcactttgagtgaaatgccaaagctgaaaaatatatgt 5057  T
Q  311 agtgtggatcctcaagggattcttagttttcataatctagaaaatgtatctcttgtaaattgtggaagcatagattatctgtttacgctttctgtggcct 410  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5056 agtgtggatcctcaaaggattcttagttttcataatctagaaaatgtatctcttgtaaattgtggaagcatagattatctgtttccgctttctgtggcct 4957  T
Q  411 cttgctgttcacatctagaaatacttagtttgacattgtgtgggagcatgaaggaaatt 469  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4956 cttgttgttcacatctagaaatacttagtttgacattgtgtgggcgcatgaaggaaatt 4898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 11 - 469
Target Start/End: Complemental strand, 13096 - 12638
Alignment:
Q  11 cataggttcgactctccaaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13096 cataggttcgactatccaaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccatcagtttgactcattgaagacgttgaa 12997  T
Q  111 agtgaataaatgtgacaaaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12996 agtgaataaatgtgacaaaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtg 12897  T
Q  211 gaagagatatttgattccaatgaaaaggggaagtaaagaggatgcaacaaatctgaaagaaatcactttgagtgaaatgccaaagctgaaaaatatatgt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12896 gaagagatatttgattccaatgaaaaggggaagtaaagaggatgcaacaaatctgaaagaaatcactttgagtgaaatgccaaagctgaaaaatatatgt 12797  T
Q  311 agtgtggatcctcaagggattcttagttttcataatctagaaaatgtatctcttgtaaattgtggaagcatagattatctgtttacgctttctgtggcct 410  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12796 agtgtggatcctcaaaggattcttagttttcataatctagaaaatgtatctcttgtaaattgtggaagcatagattatctgtttccgctttctgtggcct 12697  T
Q  411 cttgctgttcacatctagaaatacttagtttgacattgtgtgggagcatgaaggaaatt 469  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12696 cttgttgttcacatctagaaatacttagtttgacattgtgtgggcgcatgaaggaaatt 12638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 473
Target Start/End: Complemental strand, 19344880 - 19344410
Alignment:
Q  11 cataggttcgactctccaaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaa 110  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  19344880 cataggttcgattctccaaattagaggaaatcatattgaatgacatggagaacttgaagacaatatggcaccgccagtttgactcattgaagacgttgaa 19344781  T
Q  111 agtgaataaatgtgacaaaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtg 210  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19344780 agtgaataaatgtgacaaaatcacagtagtttttccttcttcattgcaaaaaacatacaataatctagagatgctagatattacaaactgtgcttcagtg 19344681  T
Q  211 gaagagatatttg------attccaatgaaaaggggaagtaaagaggatgcaacaaatctgaaagaaatcactttgagtgaaatgccaaagctgaaaaat 304  Q
     ||||||||||||      |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  19344680 aaagagatatttgaattgaattccactgaaaa-gggaagtaaagaggatgcaacaaatctgaaagaaatcactttgagtaaaatgccaaagctaaaaaat 19344582  T
Q  305 atatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgtatctcttgtaaattgtggaagcatagattatctgtttacgctttctg 404  Q
    ||||| | | ||||||||||||||||||||||||||||||||||||||||||||  | | |   ||||||||||||| || ||||| |||  ||||||||    
T  19344581 atatggactatggatcctcaagggattcttagttttcataatctagaaaatgtagatgtagatgattgtggaagcatggaatatctatttctgctttctg 19344482  T
Q  405 tggcc---tcttgctgttcacatctagaaatacttagtttgacattgtgtgggagcatgaaggaaattgttg 473  Q
    | |||   | |||||| ||||||||  ||||||||| ||||  || ||||| || |||||||||||||||||    
T  19344481 tagccatttgttgctgctcacatcttaaaatacttaatttgttatcgtgtgagaacatgaaggaaattgttg 19344410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 13543394 - 13543590
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca 127  Q
    ||||||||| ||||||||||||| || ||||| |||||||| ||||||||||| ||||| |||||  |||  |||| |||| ||||||| || ||| | |    
T  13543394 aaattagagaaaatcatattgaaggatatggacaacttgaagacaatatggcatcaccaatttgaaacatcaaagatgttggaagtgaacaattgtaaga 13543493  T
Q  128 aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga 224  Q
    ||||    |  ||||||||||||||| || | || ||||| ||||| || |||| | | ||  |||||||||||| |||||| ||||||||||||||    
T  13543494 aaattgtggtggtttttccttcttcaatgcagaacacatataataagcttgagaagttggaggttacaaattgtgtttcagttgaagagatatttga 13543590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 13670554 - 13670750
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca 127  Q
    ||||||||| ||||||||||||| || ||||| | |||||| ||||||||||| || || |||||  ||| ||||| |||||||||||| || ||| | |    
T  13670554 aaattagagaaaatcatattgaaggatatggacagcttgaagacaatatggcatcagcaatttgaaacatcgaagatgttgaaagtgaacaattgtaaga 13670653  T
Q  128 aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga 224  Q
    ||||    |  ||||||||||||||| || |||| ||||||||| | ||||||| | | ||  ||| |||||||| || ||| ||||||||||||||    
T  13670654 aaattgtggttgtttttccttcttcaatgcaaaacacatacaatgagctagagaagttggaggttagaaattgtgatttagttgaagagatatttga 13670750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 15899262 - 15899066
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca 127  Q
    ||||||||| ||||||||||||| || ||||| |||||||| ||| ||||||| ||||| ||| |  ||||||||| |||| ||||||| || ||| | |    
T  15899262 aaattagagaaaatcatattgaaggatatggacaacttgaagacagtatggcatcaccaatttaaaacattgaagatgttggaagtgaacaattgtaaga 15899163  T
Q  128 aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga 224  Q
    ||||    |  ||||||||||||||| || |||| ||||| ||| | || |||||| | ||  ||| ||||||||||||||| ||||| ||||||||    
T  15899162 aaattgtggtggtttttccttcttcaatgcaaaacacatataatgagcttgagatgttggaggttagaaattgtgcttcagttgaagaaatatttga 15899066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 13420896 - 13420984
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaa 116  Q
    ||||||||| ||||||||||||| || ||||| |||||||| ||||||||||| ||||| |||||  ||||||||| |||| |||||||    
T  13420896 aaattagagaaaatcatattgaaggatatggacaacttgaagacaatatggcatcaccaatttgaaacattgaagatgttggaagtgaa 13420984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 13655150 - 13655343
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca 127  Q
    ||||||||| |||| ||| |||| || ||||| ||||||||  |||||||||||||||| |||||  ||||||||| |||| ||||||| || ||| | |    
T  13655150 aaattagagaaaattatactgaaggatatggacaacttgaagtcaatatggcaccaccaatttgaaacattgaagatgttggaagtgaacaattgtaaga 13655249  T
Q  128 aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatt 221  Q
    ||||    |  ||||||||||||||| || |||| ||||| ||| | ||||||| | | ||  | ||||| ||||||| ||| |||||||||||    
T  13655250 aaattgtggtggtttttccttcttcaatgcaaaacacatataatgagctagagaagttggaggtcacaaactgtgctttagttgaagagatatt 13655343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 13684810 - 13684996
Alignment:
Q  38 aaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgacaaaatcacagc 137  Q
    ||||||||||||| || ||| | |||||||| ||||||||||| | ||| |||||   |||||||| |||| ||||||| || ||| | |||||    |     
T  13684810 aaatcatattgaaggatatgaacaacttgaagacaatatggcatcgccaatttgaaatattgaagatgttggaagtgaacaattgtaagaaaattgtggt 13684909  T
Q  138 agtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga 224  Q
     ||||||||||||||| || |||| ||||| ||| | || |||| | | ||  ||||||||||||||| ||| ||||||||||||||    
T  13684910 ggtttttccttcttcaatgcaaaacacatataatgagcttgagaagttggaggttacaaattgtgctttagttgaagagatatttga 13684996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 20477522 - 20477718
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca 127  Q
    ||||||||| ||||||||||||| || ||||| | |||||| ||||||||||| |  || |||||  ||| ||||| |||| ||||||| || ||| | |    
T  20477522 aaattagagaaaatcatattgaaggatatggacagcttgaagacaatatggcatcggcaatttgaaacatcgaagatgttggaagtgaacaattgtaaga 20477621  T
Q  128 aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga 224  Q
    ||||    |  ||||||||||||||| || |||| ||||| ||| | || |||| | | ||  ||| ||||||||||| ||| ||||||||||||||    
T  20477622 aaattgtggtggtttttccttcttcaatgcaaaacacatataatgagcttgagaagttggaggttagaaattgtgctttagttgaagagatatttga 20477718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 13650088 - 13650274
Alignment:
Q  38 aaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgacaaaatcacagc 137  Q
    ||||||||||||| || ||||| | |||||| |||||||||||  |||| |||||  |||  |||| |||| ||||||| || ||| | |||||    |     
T  13650088 aaatcatattgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatccaagatgttggaagtgaacaattgtaagaaaattgtggt 13650187  T
Q  138 agtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga 224  Q
     ||||||||||||||| || |||| ||||| ||| | || |||| | | ||  ||||||||||||||| ||| ||||||||||||||    
T  13650188 ggtttttccttcttcaatgcaaaatacatataatgagcttgagaagttggaggttacaaattgtgctttagttgaagagatatttga 13650274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 16497209 - 16497144
Alignment:
Q  27 caaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttga 92  Q
    |||||| ||| ||||||||||||| |||||||| |||||||| ||||||||| |||| || |||||    
T  16497209 caaattggagaaaatcatattgaaggacatggacaacttgaagacaatatggtaccatcaatttga 16497144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 13670828 - 13670889
Alignment:
Q  297 tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta 358  Q
    ||||||| ||||| ||||  ||||||||||| |||||||||||||| ||||||  |||||||    
T  13670828 tgaaaaagatatggagtgaagatcctcaaggaattcttagttttcaaaatctaataaatgta 13670889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 358
Target Start/End: Complemental strand, 19138098 - 19138033
Alignment:
Q  293 aagctgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta 358  Q
    ||||||||||| ||||| |||   ||||||||||| |||||||||||||| ||||||  |||||||    
T  19138098 aagctgaaaaagatatggagtagagatcctcaaggaattcttagttttcaaaatctaataaatgta 19138033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 13655424 - 13655476
Alignment:
Q  297 tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatcta 349  Q
    ||||||| ||||| ||||  ||||||||||| |||||||||||||| ||||||    
T  13655424 tgaaaaagatatggagtggagatcctcaaggaattcttagttttcaaaatcta 13655476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 13685070 - 13685126
Alignment:
Q  293 aagctgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatcta 349  Q
    ||||||||||| ||||| ||||  |||||| |||| |||||||||||||| ||||||    
T  13685070 aagctgaaaaagatatggagtggagatcctgaaggaattcttagttttcaaaatcta 13685126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 15898992 - 15898936
Alignment:
Q  293 aagctgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatcta 349  Q
    |||||||| || ||||| ||||  ||||||||||| |||||||||||||| ||||||    
T  15898992 aagctgaacaagatatggagtggagatcctcaaggaattcttagttttcaaaatcta 15898936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 20477796 - 20477848
Alignment:
Q  297 tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatcta 349  Q
    ||||||| ||||| ||||  ||||||||||| |||||||||||||| ||||||    
T  20477796 tgaaaaagatatggagtggagatcctcaaggaattcttagttttcaaaatcta 20477848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 8480226 - 8480020
Alignment:
Q  11 cataggttcgactctccaaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8480226 cataggttcgactctccaaattagaggaaatcatattgaatgacatggagaacttgaagacaatatggcaccaccagtttgactcattgaagacgttgaa 8480127  T
Q  111 agtgaataaatgtgacaaaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8480126 agtgaataaatgtgacaaaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctaaatattacaaattgtgcttcagtg 8480027  T
Q  211 gaagaga 217  Q
    || ||||    
T  8480026 gaggaga 8480020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 227 - 303
Target Start/End: Complemental strand, 328240 - 328164
Alignment:
Q  227 ccaatgaaaaggggaagtaaagaggatgcaacaaatctgaaagaaatcactttgagtgaaatgccaaagctgaaaaa 303  Q
    ||||||||||||| |||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||    
T  328240 ccaatgaaaagggtaagtaaagaggatgcaacaaatctgaattaaatcactttgactgaaatgccaaagctgaaaaa 328164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 49; Significance: 8e-19; HSPs: 8)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 168168 - 168364
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca 127  Q
    ||||||||| ||||||||||||| || ||||| | |||||| ||||||||||| || || |||||  ||| ||||| |||||||||||| || ||| | |    
T  168168 aaattagagaaaatcatattgaaggatatggacagcttgaagacaatatggcatcagcaatttgaaacatcgaagatgttgaaagtgaacaattgtaaga 168267  T
Q  128 aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga 224  Q
    ||||    |  ||||||||||||||| || |||| ||||||||| | ||||||| | | ||  ||| |||||||| || ||| ||||||||||||||    
T  168268 aaattgtggttgtttttccttcttcaatgcaaaacacatacaatgagctagagaagttggaggttagaaattgtgatttagttgaagagatatttga 168364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 144911 - 145104
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca 127  Q
    ||||||||| |||| ||| |||| || ||||| ||||||||  |||||||||||||||| |||||  ||||||||| |||| ||||||| || ||| | |    
T  144911 aaattagagaaaattatactgaaggatatggacaacttgaagtcaatatggcaccaccaatttgaaacattgaagatgttggaagtgaacaattgtaaga 145010  T
Q  128 aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatt 221  Q
    ||||    |  ||||||||||||||| || |||| ||||| ||| | ||||||| | | ||  | ||||| ||||||| ||| |||||||||||    
T  145011 aaattgtggtggtttttccttcttcaatgcaaaacacatataatgagctagagaagttggaggtcacaaactgtgctttagttgaagagatatt 145104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 218759 - 218955
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca 127  Q
    ||||||||| |||| |||||||| || ||||| | |||||| ||||||||||| ||||| |||||  ||| ||||| |||| ||| ||| || ||| |||    
T  218759 aaattagagaaaattatattgaaggatatggacagcttgaagacaatatggcatcaccaatttgaaacatcgaagatgttggaagcgaacaattgtaaca 218858  T
Q  128 aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga 224  Q
    ||||    |  ||||||||||||||| || |||| ||||| ||| | || |||| | | ||  ||| |||||||| || ||| ||||||||||||||    
T  218859 aaattgtggtggtttttccttcttcaatgcaaaacacatataatgagcttgagaagttggaggttagaaattgtgatttagttgaagagatatttga 218955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 109919 - 110007
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaa 116  Q
    ||||||||| |||||||||| || || ||||| | |||||| ||||||||||| ||||| |||||  ||| ||||| |||| |||||||    
T  109919 aaattagagaaaatcatatttaaggatatggacatcttgaagacaatatggcatcaccaatttgaaacatcgaagatgttggaagtgaa 110007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 110193 - 110254
Alignment:
Q  297 tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta 358  Q
    ||||||| ||||| ||||  ||||||||||| |||||||||||||| ||||||  |||||||    
T  110193 tgaaaaagatatggagtggagatcctcaaggaattcttagttttcaaaatctaataaatgta 110254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 168442 - 168503
Alignment:
Q  297 tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta 358  Q
    ||||||| ||||| ||||  ||||||||||| |||||||||||||| ||||||  |||||||    
T  168442 tgaaaaagatatggagtgaagatcctcaaggaattcttagttttcaaaatctaataaatgta 168503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 219033 - 219094
Alignment:
Q  297 tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta 358  Q
    ||||||| ||||| ||||  ||||||||||| |||||||||||||| ||||||  |||||||    
T  219033 tgaaaaagatatggagtgcagatcctcaaggaattcttagttttcaaaatctaataaatgta 219094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 145185 - 145237
Alignment:
Q  297 tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatcta 349  Q
    ||||||| ||||| ||||  ||||||||||| |||||||||||||| ||||||    
T  145185 tgaaaaagatatggagtggagatcctcaaggaattcttagttttcaaaatcta 145237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 26548 - 26744
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca 127  Q
    ||||||||| ||||||||||||| || ||||| | |||||| |||||||||||  |||| |||||  ||| ||||| |||| ||||||| || ||| | |    
T  26548 aaattagagaaaatcatattgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttggaagtgaacaattgtaaga 26647  T
Q  128 aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga 224  Q
    ||||    |  ||||||||||||||| || |||| ||||| ||| | || |||| | | ||  ||||||||||||||| ||| ||||||||||||||    
T  26648 aaattgtggtggtttttccttcttcaatgcaaaatacatataatgagcttgagaagttggaggttacaaattgtgctttagttgaagagatatttga 26744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 22284114 - 22283918
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca 127  Q
    ||||||||| ||||| || |||| || ||||| |||||||| ||||||||||| | ||| ||| |  ||||||||| |||| ||||||| || ||| | |    
T  22284114 aaattagagaaaatcttactgaaggatatggacaacttgaagacaatatggcatccccaatttaaaacattgaagatgttggaagtgaacaattgtaaga 22284015  T
Q  128 aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga 224  Q
    ||||    |  ||||||||||||||| || |||| ||||| ||| |||| |||| | | ||  ||||||||||||||| ||| ||||||||||||||    
T  22284014 aaattgtggttgtttttccttcttcagtgcaaaacacatataatgatcttgagaagttggaggttacaaattgtgctttagttgaagagatatttga 22283918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 21814714 - 21814762
Alignment:
Q  300 aaaatatatgtagtgtggatcctcaagggattcttagttttcataatct 348  Q
    |||| ||||| ||||  |||||||||||||||||||||||||| |||||    
T  21814714 aaaagatatggagtgaagatcctcaagggattcttagttttcaaaatct 21814762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 41054 - 40858
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca 127  Q
    ||||||||| |||||||| |||| || ||| | |||||||| ||||||||||| ||||| |||||  |||||||||  ||| ||||||| || ||| | |    
T  41054 aaattagagaaaatcatactgaaggatatgaacaacttgaagacaatatggcatcaccaatttgaaacattgaagattttggaagtgaacaattgtaaga 40955  T
Q  128 aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga 224  Q
    ||||    |  ||||||||||||||| || |||| ||||||||| | || |||| | | ||  |||||||||||| || ||| ||| ||||||||||    
T  40954 aaattgtggtggtttttccttcttcagtgcaaaacacatacaatgagcttgagaagttggaggttacaaattgtgatttagttgaacagatatttga 40858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 40781 - 40719
Alignment:
Q  296 ctgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta 358  Q
    |||||||| ||||| ||||  ||||||||||| |||||||||||||| ||||||  |||||||    
T  40781 ctgaaaaagatatggagtggagatcctcaaggaattcttagttttcaaaatctaataaatgta 40719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 38057907 - 38057711
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca 127  Q
    ||||||||  ||||||||||||| || ||||| |||||||| |||||||||||  |||| ||| |  ||||||||| |||| ||||||| || ||  | |    
T  38057907 aaattagaaaaaatcatattgaaggatatggacaacttgaagacaatatggcattaccaatttaaaacattgaagatgttgcaagtgaacaattgcaaga 38057808  T
Q  128 aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga 224  Q
    ||||    |  |||||||||||||||||| |||||||||| | | | ||||| | | | ||  ||| ||||||||||| ||| ||||||||||||||    
T  38057807 aaattgtggtggtttttccttcttcattgcaaaaaacatatattgagctagaaaagttggaggttagaaattgtgctttagttgaagagatatttga 38057711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 7887 - 7799
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaa 116  Q
    ||||||||| |||||||| |||| || ||||| |||||||| ||||||||||| ||||| |||||  ||| ||||| |||| |||||||    
T  7887 aaattagagaaaatcatactgaaggatatggacaacttgaagacaatatggcatcaccaatttgaaacatcgaagatgttggaagtgaa 7799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 7615 - 7554
Alignment:
Q  297 tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta 358  Q
    ||||||| ||||| ||||  |||||||||||||||||||||||||| ||||||  |||||||    
T  7615 tgaaaaagatatggagtgaagatcctcaagggattcttagttttcaaaatctaataaatgta 7554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 20814871 - 20814675
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca 127  Q
    ||||||||| |||||||| |||| || ||||| | |||||| |||||||||||  |||| |||||  ||| ||||| |||| ||||||| || ||| | |    
T  20814871 aaattagagaaaatcatactgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttggaagtgaacaattgtaaga 20814772  T
Q  128 aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga 224  Q
    ||||    |  ||||||||||||||| || |||  ||||| ||| | || |||| | | ||  |||||||||||| |||||| ||||||||||||||    
T  20814771 aaattgtggtggtttttccttcttcaatgcaaattacatataatgagcttgagaagttggaggttacaaattgtgattcagttgaagagatatttga 20814675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 115768 - 115964
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca 127  Q
    ||||||||| ||||||||||||| || ||||| | |||||| ||||||||||| |  || |||||  ||| ||||| |||| ||||||| || ||| | |    
T  115768 aaattagagaaaatcatattgaaggatatggacagcttgaagacaatatggcatcggcaatttgaaacatcgaagatgttggaagtgaacaattgtaaga 115867  T
Q  128 aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga 224  Q
    ||||    |  ||||||||||||||| || |||| ||||| ||| | || |||| | | ||  ||| |||||||| || ||| ||||||||||||||    
T  115868 aaattgtggtggtttttccttcttcaatgcaaaacacatataatgagcttgagaagttggaggttagaaattgtgatttagttgaagagatatttga 115964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 116042 - 116094
Alignment:
Q  297 tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatcta 349  Q
    ||||||||||||||||||  |||||| |||| |||||||||||||| ||||||    
T  116042 tgaaaaatatatgtagtggagatcctgaaggaattcttagttttcaaaatcta 116094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 108225 - 108286
Alignment:
Q  297 tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta 358  Q
    ||||||| ||||| ||||  ||||||||||| |||||||||||||| ||||||  |||||||    
T  108225 tgaaaaagatatggagtgaagatcctcaaggaattcttagttttcaaaatctaataaatgta 108286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 107951 - 108039
Alignment:
Q  28 aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaa 116  Q
    ||||||||| |||||||| | || || ||| | ||||||||  |||||||||||||||| |||||   |||||||| |||| |||||||    
T  107951 aaattagagaaaatcatactcaaggatatgtacaacttgaagtcaatatggcaccaccaatttgaaaaattgaagatgttggaagtgaa 108039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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