View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16549_low_2 (Length: 840)
Name: NF16549_low_2
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 634
Target Start/End: Original strand, 45091942 - 45092594
Alignment:
| Q |
1 |
atactgttaggaaattaactctagctgcgtgataaaatctgcaactcgaaaaacaaatgtgaannnnnnnn-cccgggcaaaatctcaatctaatttcct |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45091942 |
atactgttaggagattaactctagctgcgtgataaaatgtgcaactcgaaaaacaaatgtgaatttttttttcccgggcaaaatctcaatctaatttcct |
45092041 |
T |
|
| Q |
100 |
actgttaattttactgcgtttgaaacctgacagacaatgttcatggttgttgtccttgggcccttcagatctggct---------------tctgctgtt |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45092042 |
actgttaattttactgcgtttgaaacctgacagacaatgttcatggttgttgtccttgggcccttcagatctggctaattttactctagcttctgctgtt |
45092141 |
T |
|
| Q |
185 |
tgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttgacaaaaagctccaaaagggttatgtcttttggaacaaag |
284 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45092142 |
tgtttattttttagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttgacaaaaagccccaaaagggttatgtcttttggaacaaag |
45092241 |
T |
|
| Q |
285 |
tagccagtgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattgcaacaacttctttactcatccaccaactatcaaacatct |
384 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45092242 |
tagccattgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattgcaacaacttctttactcatccaccaattatcaaacatct |
45092341 |
T |
|
| Q |
385 |
ggaaaatttggacaatgttgagaccaatgatagtcgaaatgtgcgaacacaagtc---gatattattcgtaactggattggaaaaaagactgtggattct |
481 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| ||||||||| |
|
|
| T |
45092342 |
gaaaaatttggacaatgttgagaccaatgatagtcgaaatgtgcgaacacaagtcaaagatattatccataactggattggaaaaaagaccgtggattct |
45092441 |
T |
|
| Q |
482 |
cattcttatattgccaggtttcgggtttgtaagaggttctatgaactgatgctagtttgttgttcttggtttggttatgtcattttgacttttgaaggat |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45092442 |
cattcttatattgccaggtttcgggtttgtaagaggttgtacgaactgatgctagtttgttgttcttggtttggttatgtccttttgacttttgaaggat |
45092541 |
T |
|
| Q |
582 |
ctatgtgtatgatcaactatgtttgtgttagtttttctctcaactttgatttt |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45092542 |
ctatgtgtatgatcaactatgtttgtgttagtttttctctcaactttgatttt |
45092594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 146 - 631
Target Start/End: Original strand, 24375849 - 24376337
Alignment:
| Q |
146 |
ttgttgtccttgggcccttcagatctggcttctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttg |
245 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24375849 |
ttgttgtccttgggcccttcagacctggcttctgttgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttg |
24375948 |
T |
|
| Q |
246 |
acaaaaagctccaaaagggttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattg |
345 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24375949 |
acaaaaagccccaaaagggttatgtcttttggaacaaagtagccagtgcatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattg |
24376048 |
T |
|
| Q |
346 |
caacaacttctttactcatccaccaactatcaaacatctggaaaatttggacaatgttgagaccaatgatagtcgaaatgtgcgaacacaagtc---gat |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| |
|
|
| T |
24376049 |
caacaacttctttactcatccaccaactatcaaacatctggaaaatttggacaatgttgagaccgatgatagtcgaaatgtgcgaacagaagtcaaagat |
24376148 |
T |
|
| Q |
443 |
attattcgtaactggattggaaaaaagactgtggattctcattcttatattgccaggtttcgggtttgtaagaggttctatgaactgatgctagtttgtt |
542 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24376149 |
attatccgtaactggattggaaaaaagactgtggattctcattcttatattgccaggtttcggatttgtaagaggttgtatgaactgatgctagtttgtt |
24376248 |
T |
|
| Q |
543 |
gttcttggtttggttatgtcattttgacttttgaaggatctatgtgtatgatcaactatgtttgtgttagtttttctctcaactttgat |
631 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24376249 |
gttcttggtttggttatgtccttttgacttttgaaggatctatgtgtatgatcaactatgtttgtgttagtttttctctcaactttgat |
24376337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 146 - 634
Target Start/End: Original strand, 21781169 - 21781660
Alignment:
| Q |
146 |
ttgttgtccttgggcccttcagatctggcttctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttg |
245 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21781169 |
ttgttgtccttgggcccttcagatatggcttctgctgtttgtttattttatagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttg |
21781268 |
T |
|
| Q |
246 |
acaaaaagctccaaaagggttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattg |
345 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
21781269 |
acaaaaagccccaaaagagttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagtgactagggaaacttacgaggctgacttccattg |
21781368 |
T |
|
| Q |
346 |
caacaacttctttactcatccaccaactatcaaacatctggaaaatttggacaatgttgagaccaatgatagtcgaaatgtgcgaacacaagtc---gat |
442 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
21781369 |
caacaacctctttaatcatccaccaaccatcaaacatctggaaaatttggacaatgttgagaccaatgatagtcgaaatatgcgaacacaagtcaaagat |
21781468 |
T |
|
| Q |
443 |
attattcgtaactggattggaaaaaagactgtggattctcattcttatattgccaggtttcgggtttgtaagaggttctatgaactgatgctagtttgtt |
542 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
21781469 |
attatccgtaactggattggaaaaaagactttggattctcattcttatattgctaggtttcgggtttgtaagaggttgtatgaactaatgctagtttgtt |
21781568 |
T |
|
| Q |
543 |
gttcttggtttggttatgtcattttgacttttgaaggatctatgtgtatgatcaactatgtttgtgttagtttttctctcaactttgatttt |
634 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21781569 |
gttcttggtttggttatgtccttttgacttttgaaggatctatgtgtatgattaactatgtttgtgttagtttttctctcaactttgatttt |
21781660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 633 - 822
Target Start/End: Original strand, 45102631 - 45102820
Alignment:
| Q |
633 |
ttgtggcaagtatgagtgcaagcaaatgcttctttttgaccattaaatcacaaatcctgaaaagaataatcacctgcaaacatattgcacagaaagtatc |
732 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45102631 |
ttgtggcaagtatgagtgcaagcaaatgcttctttttgaccattaaatcacaaatcctgaaaagaataatcacctgcaaacatattgcacagaaagtatc |
45102730 |
T |
|
| Q |
733 |
ctctgccttcatgcccttcaaaaccatatggtgcggtagcttattcaatgaatcccccgacaatcctctggatgatactaagctatgaac |
822 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45102731 |
ctctgccttcatgcccttcaaaaccatatggtgcggtagcttattcaatgaatcccccgacaatcctgtggatgatactaagctatgaac |
45102820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 730 - 822
Target Start/End: Complemental strand, 35816830 - 35816738
Alignment:
| Q |
730 |
atcctctgccttcatgcccttcaaaaccatatggtgcggtagcttattcaatgaatcccccgacaatcctctggatgatactaagctatgaac |
822 |
Q |
| |
|
||||||||| |||||| ||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35816830 |
atcctctgctttcatgtccttcaagattatacggtgcagtagcttattcaatgaatcccccgacaatcctctggatgctactaagctatgaac |
35816738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 730 - 822
Target Start/End: Complemental strand, 45177323 - 45177231
Alignment:
| Q |
730 |
atcctctgccttcatgcccttcaaaaccatatggtgcggtagcttattcaatgaatcccccgacaatcctctggatgatactaagctatgaac |
822 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| ||||||||| ||||| |||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
45177323 |
atcctctgccttcatgcccttcaagataatatggttcggtagcttcttcaacgaatcccctgacaatcctctggatgctactaagctatgaac |
45177231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 730 - 822
Target Start/End: Original strand, 45568203 - 45568295
Alignment:
| Q |
730 |
atcctctgccttcatgcccttcaaaaccatatggtgcggtagcttattcaatgaatcccccgacaatcctctggatgatactaagctatgaac |
822 |
Q |
| |
|
|||||||| ||||||| ||||| | | |||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
45568203 |
atcctctgtcttcatgtccttctagatcatatggtgcagtagcttattcaatgaatcccctgacaatcctctggatgctactaagctatgaac |
45568295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 730 - 822
Target Start/End: Original strand, 45093523 - 45093612
Alignment:
| Q |
730 |
atcctctgccttcatgcccttcaaaaccatatggtgcggtagcttattcaatgaatcccccgacaatcctctggatgatactaagctatgaac |
822 |
Q |
| |
|
||||| ||||||| || ||||||| | |||||||||||||| |||| |||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
45093523 |
atcctttgccttcgtgtccttcaagatcatatggtgcggtaactta---aatgaatcccatgacaatcctctggatgctactaagctatgaac |
45093612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 152 - 634
Target Start/End: Complemental strand, 9106259 - 9105776
Alignment:
| Q |
152 |
tccttgggcccttcagatctggcttctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttgacaaaa |
251 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||| |||||||| |||| | |||||||||||||||| |
|
|
| T |
9106259 |
tccttgggcccttcagatatggcttctgctgtttgtttatgttctagtttatgtctctgttttttctagtttaaggatgcatttttgttgtttgacaaaa |
9106160 |
T |
|
| Q |
252 |
agctccaaaagggttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattgcaacaa |
351 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9106159 |
atccccaaaagggttatgtcttttggaacaaagtagccaatgtatgttggcaacccatttatactaagaaagcttacgaggctgactcccattgcaacaa |
9106060 |
T |
|
| Q |
352 |
cttctttactcatccaccaactatcaaacatctggaaaatttggacaatgttgagaccaatgatagtcgaaatgtgcgaacacaagtc---gatattatt |
448 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |
|
|
| T |
9106059 |
cttctttactcatccactagctatcaaacatctggaaaaattggacaatgttgagaccaatgatagtcaaaatgtgcgaacacaagtcaaagatactatc |
9105960 |
T |
|
| Q |
449 |
cgtaactggattggaaaaaagactgtggattctcattcttatattgccaggtttcgggtttgtaagaggttctatgaactgatgctagtttgttgttctt |
548 |
Q |
| |
|
|||||||||||| |||| ||| || |||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||| | |||||| |
|
|
| T |
9105959 |
tgtaactggattgaaaaagagattg--gattctcattcttatattgctaggttccgagtttgtaagaggttgaatgaactgatgctagtttttcgttctt |
9105862 |
T |
|
| Q |
549 |
ggtttggttatgtcattttgacttttgaaggatctatgtgtatgatcaactatgtttgtgttagtttttctctcaactttgatttt |
634 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9105861 |
ggtttggttatgtccttttggcttttgaacaatctctgtgtatgatcaactatgtttgtgttagtttttctctcaactttgatttt |
9105776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 149 - 611
Target Start/End: Complemental strand, 11789024 - 11788561
Alignment:
| Q |
149 |
ttgtccttgggcccttcagatctggcttctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttgaca |
248 |
Q |
| |
|
|||||||||||| |||||||| ||| |||||||||| |||| |||||||||||||||||||||| ||| ||||||| ||||| ||| |||||||||| |
|
|
| T |
11789024 |
ttgtccttgggcgcttcagatatggtttctgctgttggttttatttctagtttatgtctttgtttatcctgttttaaggatgcacgctttttgtttgaca |
11788925 |
T |
|
| Q |
249 |
aaaagctccaaaagggttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattgcaa |
348 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||| |
|
|
| T |
11788924 |
aaaagacccaagagggttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagagactaaggaagcttccgaggctggcccccattgcaa |
11788825 |
T |
|
| Q |
349 |
caacttctttactcatccaccaactatcaaacatctggaaaatttggacaatgttgagaccaatgatagtcgaaatgtgcgaacacaagtc---gatatt |
445 |
Q |
| |
|
||| ||| | |||||||||| || |||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||||||||||| || ||| |
|
|
| T |
11788824 |
caatctctcttttcatccaccagctgtcaaacatctggaaaaattgtacaattttgagaccaatgatagtcgaattgtgcgaacacaagtcaaagaaatt |
11788725 |
T |
|
| Q |
446 |
attcgtaactggattggaaaaaagactgtggattctcattcttatattgccaggtttcgggtttgtaagaggttctatgaactgatgctagtttgttgtt |
545 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
11788724 |
atccgtaactggattggaaaaaagactgtggattctcttccttatattgccaggttccgggtttgtaagaggtcgaatgaagtgatgctagtttgttgtt |
11788625 |
T |
|
| Q |
546 |
cttggtttggttatgtcattttgacttttgaaggatctatgtgtatgatcaactatgtttgtgtta |
611 |
Q |
| |
|
||||||||||| ||||| |||| |||| ||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
11788624 |
cttggtttggt--tgtcactttggctttcgaacaatctatgtgtatgatcaactatgtatgtgtta |
11788561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 443 - 484
Target Start/End: Complemental strand, 22792983 - 22792942
Alignment:
| Q |
443 |
attattcgtaactggattggaaaaaagactgtggattctcat |
484 |
Q |
| |
|
||||| ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
22792983 |
attatccgtaactggataggaaaaaagactttggattctcat |
22792942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 392 - 501
Target Start/End: Complemental strand, 32021239 - 32021127
Alignment:
| Q |
392 |
ttggacaatgttgagaccaatgatagtcgaaatgtgcgaacacaagtc---gatattattcgtaactggattggaaaaaagactgtggattctcattctt |
488 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| |||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32021239 |
ttggacaattttgagaccaatgatagttgaattgtgcgaacacaagtcaaagaaattatccgtaactggattggaaaaaagactgtggattctcattctt |
32021140 |
T |
|
| Q |
489 |
atattgccaggtt |
501 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
32021139 |
atatcgccaggtt |
32021127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 32021370 - 32021294
Alignment:
| Q |
216 |
tctggtttaaggctgcactcttgttgtttgacaaaaagctccaaaagggttatgtcttttggaacaaagtagccagt |
292 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
32021370 |
tctggtttaaggctgcactctagttgtttgacaaaaagcaccatgagggttatgtcttttggaacaaagtatccagt |
32021294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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