View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_21 (Length: 469)
Name: NF16549_low_21
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 137 - 446
Target Start/End: Complemental strand, 49915078 - 49914769
Alignment:
| Q |
137 |
tcttctacttctagaaacatgttgagaccacggagtagttccttgtgtaggtgttccatagggtggtgcagcacttggttgtgtgttgttaccctgaata |
236 |
Q |
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| T |
49915078 |
tcttctacttctagaaacatgttgagaccacggagtagttccttgtgtaggtgttccatagggtggtgcagcacttggttgtgtgttgttaccctgaata |
49914979 |
T |
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| Q |
237 |
gaaggaacccactgagggccaaaattttgctgtacatgtgtcacattcatagggggttgcagatattgtgtcggcataattgattgctggggtaaacccg |
336 |
Q |
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| T |
49914978 |
gaaggaacccactgagggccaaaattttgctgtacatgtgtcacattcatagggggttgcagatattgtgtcggcataattgattgctggggtaaacccg |
49914879 |
T |
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| Q |
337 |
catatgattgattcacaacatgaggtctaagatgaaaattattcattgtttgttgaggaggaaactgattctggttgttgatttgaggttgccattctgg |
436 |
Q |
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| T |
49914878 |
catatgattgattcacaacatgaggtctaagatgaaaattattcattgtttgttgaggaggaaactgattctggttgttgatttgaggttgccattctgg |
49914779 |
T |
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| Q |
437 |
tatatcatca |
446 |
Q |
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|||||||||| |
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| T |
49914778 |
tatatcatca |
49914769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 49915233 - 49915136
Alignment:
| Q |
1 |
agaataaaagtcatttgcaccgattactacctcaacagggtatt-------------gatgaaaacagtctgacactaaagtttacatggctacaact |
85 |
Q |
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| T |
49915233 |
agaataaaagtcatttgcaccgtttactacctcaacagggtattgatgttggaaaaagatgaaaacagtctgacactaaagtttacatggctacaact |
49915136 |
T |
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