View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_24 (Length: 429)
Name: NF16549_low_24
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 412
Target Start/End: Original strand, 39393240 - 39393648
Alignment:
| Q |
8 |
attattctatttaaaaagacggttgatatgagagggagagagtatttggtcacatttaacattgttggtttgagacggtg--------ccggttaaaggc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| || || |
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| T |
39393240 |
attattctatttaaaaagacggttgatatgagagggagagaggattt----------aacattgttggtttgagacggtgtatgtgagccggttgaaagc |
39393329 |
T |
|
| Q |
100 |
tgca---attgaa---gaaaaatattatagttaatgttcaaactttattcttaacgaccaaggacattggttggttcgacgttgattccgtccagagtcc |
193 |
Q |
| |
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|||| |||||| ||||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| |
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| T |
39393330 |
tgcagcaattgaattagaaaaatattatagttaatcttgaagctttattcttaacgactaaggacattggttggttcgacgttgattccgtcaaaagtcc |
39393429 |
T |
|
| Q |
194 |
aatatatcttccaattccaaactattttttcttctcattttcattcacttagcctcctataccacaaggtaa-ccccgtcaacctagtacacacgttctt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39393430 |
aatatatcttccaattccaaactattttttcttctcattttcattcacttagcctcctataccacaaggtaacccccgtcaacctagtacacacgttctt |
39393529 |
T |
|
| Q |
293 |
ttgctctttttctcctatattcctgtctcattactttttccaacattctaattatataacccttcctaaattcatgatttacctatcattaactattcaa |
392 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39393530 |
ttgctctttttctcctatattcctgtctcattac-ttttccaacattctaattatataacccttcctaaattcatgatttacctatcattaactattcaa |
39393628 |
T |
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| Q |
393 |
atcattcattaccttctttt |
412 |
Q |
| |
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|||||||||||||||||||| |
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| T |
39393629 |
atcattcattaccttctttt |
39393648 |
T |
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