View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16549_low_26 (Length: 422)
Name: NF16549_low_26
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 26 - 406
Target Start/End: Original strand, 9371996 - 9372368
Alignment:
| Q |
26 |
ataatattaacttttctttgttatttattgccaagaaatataggaagttagaaacttttggctttcataagaattttatatcttgttactcgcttccaca |
125 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9371996 |
ataatatttacttttctttgttatttattgccaagaaatataggaagttagaaacttttggctttcataagaatattatatcttgttactcgcttccaca |
9372095 |
T |
|
| Q |
126 |
tgcatgcaaccctctttgattacccaggaatccagcaaactaattaaggtgtcatgttgatgtatgtatgccaatggcagtacaagttcaattgttcgaa |
225 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
9372096 |
tgcatgcaaccctctttgattactcaggaatccagcaaactaattaaggtgtcatgttgatgtatgtatgccaatgacggtacaagttcaattgttcgaa |
9372195 |
T |
|
| Q |
226 |
caaaagcttccagtaggagagagagcttctttggtcttagaatggctcgatgaaaacacttaagtatctctcgaagaggcccgatgtggacgagactaac |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9372196 |
caaaagcttccagtaggagagagagcttctttggtcttagaatggctcgatgaaaacacttaagtatctctcgaagaggcccgatgtggacgagactaac |
9372295 |
T |
|
| Q |
326 |
acttgacagaagattgttggaggcttggagcgccaagttcatgaaattttaccagttctctttacaaacatgagtacttaa |
406 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9372296 |
acttgacagaagattg--------ttggagcgccaagttcatgaaattttaccagttctctttacaaacatgagtacttaa |
9372368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 9365974 - 9366109
Alignment:
| Q |
102 |
tatatcttgttactcgcttccacatgcatgcaaccctctttgattacccaggaatccagcaaactaattaaggtgtcatgttgatgtatgtatgccaatg |
201 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9365974 |
tatatctagttactcgcttccacatgcatgcaaacctctttgattactcaggaatccagcaaactaattaaggtgtcatgttgatgtatgtatgccgatg |
9366073 |
T |
|
| Q |
202 |
gcagtacaagttcaattgttcgaacaaaagcttcca |
237 |
Q |
| |
|
|| ||||||||||||||||||| | |||||||||| |
|
|
| T |
9366074 |
gcggtacaagttcaattgttcggatgaaagcttcca |
9366109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 268 - 385
Target Start/End: Original strand, 9366119 - 9366228
Alignment:
| Q |
268 |
tggctcgatgaaaacacttaagtatctctcgaagaggcccgatgtggacgagactaacacttgacagaagattgttggaggcttggagcgccaagttcat |
367 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
9366119 |
tggctcgatgaaaacacgtaagtatctctcgaagaggcctgatgtggatgatactaacacttgacagaagattg--------ttggagcaacaagttcat |
9366210 |
T |
|
| Q |
368 |
gaaattttaccagttctc |
385 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
9366211 |
gaaattttaccagttctc |
9366228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University