View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_27 (Length: 417)
Name: NF16549_low_27
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 49914183 - 49914599
Alignment:
| Q |
1 |
atggagttgaactttacttttgcccacctcataagaaaacagttgaaatgctcagcaagatacttccaaaggaacaaattgaagcagttaattctattga |
100 |
Q |
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| T |
49914183 |
atggagttgaactttacttttgcccacctcataagaaaacagttgaaatgctcagcaagatacttccaaaggaacaaattgaagcagttaattctattga |
49914282 |
T |
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| Q |
101 |
taatggtctaattggtattattgtatggagaaaaactaatataactacatctatatctcccaccgcgcaatcacatcacaaacatagctctaaaaggcaa |
200 |
Q |
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| T |
49914283 |
taatggtctaattggtattattgtatggagaaaaactaatataactacatctatatctcccaccgcgcaatcacatcacaaacatagctctaaaaggcaa |
49914382 |
T |
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| Q |
201 |
attttgagtagaagacaacaagatactaatgtgaatgccaattctacccataatgcagtgccctctatggggtttaagaccaccgtgagtgaacctccga |
300 |
Q |
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| T |
49914383 |
attttgagtagaagacaacaagatactaatgtgaatgccaattctacccataatgcagtgccctctatggggtttaagaccaccgtgagtgaacctccga |
49914482 |
T |
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| Q |
301 |
gtggtgatgatgatgatgttcctcctggattcgggccaccggcccgggttgaggatgacctcccggagtataatttttccggtagttcaaatccatcatc |
400 |
Q |
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| T |
49914483 |
gtggtgatgatgatgatgttcctcctggattcgggccaccagcccgggttgaggatgacctcccggagtataatttttccggtagttcaaatccatcatc |
49914582 |
T |
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| Q |
401 |
acacttggttcaaaaac |
417 |
Q |
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| T |
49914583 |
acacttggttcaaaaac |
49914599 |
T |
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