View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_28 (Length: 404)
Name: NF16549_low_28
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 20 - 403
Target Start/End: Original strand, 51653078 - 51653461
Alignment:
| Q |
20 |
tggtctccaacgtattgaagagaagtaagctactataaccatgttacatagttttctttgcttaggttgtgtgaattgcgattaacttgttttatttttt |
119 |
Q |
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| T |
51653078 |
tggtctccaacgtattgaagagaagtaagctactataaccatgttacatagttttctttgcttaggttgtgtgaattgtgattaacttgttttatttttt |
51653177 |
T |
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| Q |
120 |
atgctttgcttccaggtacacatggacaatttactctcagaggcttcttacactcactggtgtctatggcttctggaagcatgtgtctaacctcgaccgt |
219 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51653178 |
atgctttgcttccaggtacacatggacaatatactctcagaggcttcttacactcactggtgtctatggcttctggaagcatgtgtctaacctcgaccgt |
51653277 |
T |
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| Q |
220 |
cttgagagccgccgctatcttgagatgttctatgctctcaagtaccgcaaattggtaagttttatattagacgtatattttataagattgagttagactc |
319 |
Q |
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| T |
51653278 |
cttgagagccgccgctatcttgagatgttctatgctctcaagtaccgcaaattggtaagttttatattagacgtatattttataagattgagttagactc |
51653377 |
T |
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| Q |
320 |
gaaaactaatataaatatttttctatcaagttactaatcaatgcattttgttacatttttgtgtacctcaggctgagtctgtgc |
403 |
Q |
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| T |
51653378 |
gaaaactaatataaatatttttctatcaagttactaatcaatgcattttgttacatttttgtgtacctcaggctgagtctgtgc |
51653461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 133 - 277
Target Start/End: Complemental strand, 19151964 - 19151820
Alignment:
| Q |
133 |
aggtacacatggacaatttactctcagaggcttcttacactcactggtgtctatggcttctggaagcatgtgtctaacctcgaccgtcttgagagccgcc |
232 |
Q |
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| T |
19151964 |
aggtacacatggcagatttattctgacaggcttttgactctaactggtgtttatggcttctggaagcatgtgactaaccttgatcgccgtgagagcaaac |
19151865 |
T |
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| Q |
233 |
gctatcttgagatgttctatgctctcaagtaccgcaaattggtaa |
277 |
Q |
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| T |
19151864 |
gttaccttgagatgttctatgcacttaagtacagcaaattggtaa |
19151820 |
T |
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