View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_31 (Length: 379)
Name: NF16549_low_31
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 29505195 - 29504839
Alignment:
| Q |
18 |
aaatatagcgtcatagcaccgtcatagctactatctaacaaccctgtttcgaacataaacagtactaattcaagttatgttaaccttaccttagtattgg |
117 |
Q |
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| T |
29505195 |
aaatatagcgtcatagcaccgtcatagctactatctaacaaccctgtttcgaacataaatagtactaattcaagttatgttaaccttaccttagtattgg |
29505096 |
T |
|
| Q |
118 |
ctgggttggaaaactgttgcaacatgaaagcatttggtgttgattccaaaaggtcataagcctttttcactgttcctcccattcctttcgttggatcagt |
217 |
Q |
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||||||||||||| ||||| | ||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29505095 |
ctgggttggaaaattgttgtagcataaaagcatttggtgtggactccaaaaggtcataagcctttttcactgttcctcccattcctttcgttggatcagt |
29504996 |
T |
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| Q |
218 |
gagaatcaattccgctccaaatgctctcatacaaacccttctttccaagctcgtgtaagatggcatagtcaaaaccatcttatatcccttcatggcagcc |
317 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29504995 |
gagaatcaattcagctccaaatgctctcatgcaaacccttctttccaagcttgtgtaagatggcatagtcaaaaccatcttatatcccttcatggcagcc |
29504896 |
T |
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| Q |
318 |
ataaatgccaaactgattcccatgttgcctgatgtcggctctatcagaattatctac |
374 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
29504895 |
ataaatgccaaactgatacccatgttgcctgatgtcggctctatcagaattgtctac |
29504839 |
T |
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