View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_34 (Length: 351)
Name: NF16549_low_34
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 11590865 - 11591091
Alignment:
| Q |
15 |
gatgaacattttgagccaaataaaccagatgccaagtaagagacatgagattgaagatgttcagaaatgaagaatatgaattcagttttttcagtttatt |
114 |
Q |
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| T |
11590865 |
gatgaacattttgagccaaataaaccagatgccaagtaagagacattagattgaggatattcagaaaagaagaatatgaattcagttttttcagtttatt |
11590964 |
T |
|
| Q |
115 |
attaagcttcattatctttgctctaacagcatcatcatgctctttcctttgtgtttgagattcggttccttctgcagcaacagtggtagttgtagatgnn |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11590965 |
attaagcttcattatctttgctctaacagcatcatcatgctctttcctttgtgtttgagattcggttccttctgcagcaacagtggtagttgtagatgtt |
11591064 |
T |
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| Q |
215 |
nnnnnaggatcaggtgaattttgatgc |
241 |
Q |
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|||||||||||||||||||||| |
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| T |
11591065 |
tttttaggatcaggtgaattttgatgc |
11591091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 11646802 - 11646576
Alignment:
| Q |
15 |
gatgaacattttgagccaaataaaccagatgccaagtaagagacatgagattgaagatgttcagaaatgaagaatatgaattcagttttttcagtttatt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||| ||||||||||||||||||||||| |
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| T |
11646802 |
gatgaacattttgagccaaataaaccagatgccaagtaagagacatcagattgaggatattcagaaaagaagaatacgaattcagttttttcagtttatt |
11646703 |
T |
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| Q |
115 |
attaagcttcattatctttgctctaacagcatcatcatgctctttcctttgtgtttgagattcggttccttctgcagcaacagtggtagttgtagatgnn |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11646702 |
attaagcttcattatctttgctctaacagcatcatcatgctctttcctttgtgtttgagattcggttccttctgcagcaacagtggtagttgtagatgtt |
11646603 |
T |
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| Q |
215 |
nnnnnaggatcaggtgaattttgatgc |
241 |
Q |
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| T |
11646602 |
tttttaggatcaggtgaattttgatgc |
11646576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 41833791 - 41833746
Alignment:
| Q |
15 |
gatgaacattttgagccaaataaaccagatgccaagtaagagacat |
60 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41833791 |
gatgaacattttgagccaaataaaccagatgccaagtaagagacat |
41833746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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