View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_35 (Length: 336)
Name: NF16549_low_35
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 218 - 320
Target Start/End: Complemental strand, 9413944 - 9413842
Alignment:
| Q |
218 |
aattttcacatcatgtcgtgatctaccacaactcacctcctatctccactggacatacgaccaaacaacaggaaaactcgacatagcattcagacacaaa |
317 |
Q |
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| T |
9413944 |
aattttcacatcatgtcgtgatctaccacaactcacctcgtatctccactggacatacgaccaaacaacaggaaaactcgacatagcattcagacacaaa |
9413845 |
T |
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| Q |
318 |
ggt |
320 |
Q |
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||| |
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| T |
9413844 |
ggt |
9413842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 9414168 - 9414082
Alignment:
| Q |
23 |
tctatattaacccctttctcctctctctccaatctcacaacct---cttcactttcaatccaacccaacacaaaaacaaagcaacat |
106 |
Q |
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| T |
9414168 |
tctatattaacccctttctcctctctctccaatctcacaacctcttcttcactttcaatccaacccaacacaaaaacaaagtaacat |
9414082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 9414061 - 9414007
Alignment:
| Q |
101 |
caacatggttaagaacttaaggtttatgttcctcatctcaatcttaatgtttgtt |
155 |
Q |
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| T |
9414061 |
caacatggttaagaacttaaggtttatgttcctcatctcaatcttaatgtttgtt |
9414007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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