View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_36 (Length: 333)
Name: NF16549_low_36
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 27908467 - 27908160
Alignment:
| Q |
18 |
ccataaaagtaacctaatccaaattccaaacacacacacccatagtttttctttgttgttttatcagtagaattttcacaaataatttcaattgtaaaac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27908467 |
ccataaaagtaacctaatccaaattccaaacacacac--ccatagtttttctttgttgttttattagtagaattttcacaaataatttcaattgtaaaac |
27908370 |
T |
|
| Q |
118 |
ctagcagacacgaa-ttttaataaaacccttaaaataaatcgagtaagcaaaattaaaagtaacaaaatcagcgatcataagaaaccctaactaacctgg |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27908369 |
ctagcagacacgaaattttaataaaacccttaaaataaatcgagtaagcaaaattaaaagtaacaaaatcagcgatcataagaaaccctaactaacctgg |
27908270 |
T |
|
| Q |
217 |
atcttggccttgacgttgtcgatggtgtcgctactctcaacctcgagagtgatagtctttccggtcaaagttttgacgaagatctgcatcttgttgttct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27908269 |
atcttggccttgacgttgtcgatggtgtcgctactctcaacctcgagagtgatagtctttccggtcaaagttttgacgaagatctgcatcttgttgttct |
27908170 |
T |
|
| Q |
317 |
tcttcttctc |
326 |
Q |
| |
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|||||||||| |
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| T |
27908169 |
tcttcttctc |
27908160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Original strand, 31306589 - 31306682
Alignment:
| Q |
214 |
tggatcttggccttgacgttgtcgatggtgtcgctactctcaacctcgagagtgatagtctttccggtcaaagttttgacgaagatctgcatct |
307 |
Q |
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| T |
31306589 |
tggatcttggccttgacattatcaattgtatcggaactctctacctcaagagtgatggtttttcctgtcaatgttttcacaaagatctgcatct |
31306682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 206 - 326
Target Start/End: Original strand, 40493082 - 40493201
Alignment:
| Q |
206 |
aactaacctggatcttggccttgacgttgtcgatggtgtcgctactctcaacctcgagagtgatagtctttccggtcaaagttttgacgaagatctgcat |
305 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
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| T |
40493082 |
aactaacctggatcttggccttgacgttgtcgattgtgtcgctgctctcaacctcgagggtgatagtctttccggtcaaagtcttcacgaagatctgcat |
40493181 |
T |
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| Q |
306 |
cttgttgttcttcttcttctc |
326 |
Q |
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||| | |||||||||||||| |
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| T |
40493182 |
ctt-ctcttcttcttcttctc |
40493201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 212 - 307
Target Start/End: Complemental strand, 33773031 - 33772936
Alignment:
| Q |
212 |
cctggatcttggccttgacgttgtcgatggtgtcgctactctcaacctcgagagtgatagtctttccggtcaaagttttgacgaagatctgcatct |
307 |
Q |
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|||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| || | ||||| |||||||| ||||||| |
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| T |
33773031 |
cctggatcttagccttaacgttgtcgatggtgtcggaactctcaacctcgagagtgatggtctttccagtgagggttttcacgaagatttgcatct |
33772936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 309
Target Start/End: Complemental strand, 36459952 - 36459855
Alignment:
| Q |
212 |
cctggatcttggccttgacgttgtcgatggtgtcgctactctcaacctcgagagtgatagtctttccggtcaaagttttgacgaagatctgcatcttg |
309 |
Q |
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||||||||||||| ||||| |||||||| |||||| | |||||||||||| || || ||||| || || | ||||| |||||||||||||||||| |
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| T |
36459952 |
cctggatcttggctttgacattgtcgattgtgtcggaagactcaacctcgagggttatcgtcttccctgttagggttttcacgaagatctgcatcttg |
36459855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 246
Target Start/End: Complemental strand, 33775065 - 33775031
Alignment:
| Q |
212 |
cctggatcttggccttgacgttgtcgatggtgtcg |
246 |
Q |
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||||||||||||| ||||||||||||||||||||| |
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| T |
33775065 |
cctggatcttggctttgacgttgtcgatggtgtcg |
33775031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 42609683 - 42609768
Alignment:
| Q |
220 |
ttggccttgacgttgtcgatggtgtcgctactctcaacctcgagagtgatagtctttccggtcaaagttttgacgaagatctgcat |
305 |
Q |
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||||||||||| |||||||| ||||| || |||||||||||||| ||||| || || ||||| | ||||| |||||||||||||| |
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| T |
42609683 |
ttggccttgacattgtcgattgtgtcactgctctcaacctcgagggtgatggttttcccggttagggttttcacgaagatctgcat |
42609768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 25948487 - 25948399
Alignment:
| Q |
217 |
atcttggccttgacgttgtcgatggtgtcgctactctcaacctcgagagtgatagtctttccggtcaaagttttgacgaagatctgcat |
305 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||||||| || |||||||| || ||||| || || | ||||| ||||| |||||||| |
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| T |
25948487 |
atcttggctttgacattgtcgatggtgtcactactctcgacttcgagagtaattgtcttccctgttagggttttcacgaatatctgcat |
25948399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 305
Target Start/End: Complemental strand, 42075669 - 42075576
Alignment:
| Q |
212 |
cctggatcttggccttgacgttgtcgatggtgtcgctactctcaacctcgagagtgatagtctttccggtcaaagttttgacgaagatctgcat |
305 |
Q |
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|||| ||||| || |||||||| ||||| |||||||| ||| ||||| || ||||||||||| ||||| | ||||| |||||||||||||| |
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| T |
42075669 |
cctgaatcttagctttgacgttatcgatagtgtcgcttgactccacctcaagggtgatagtcttgccggttagggttttcacgaagatctgcat |
42075576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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