View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_38 (Length: 320)
Name: NF16549_low_38
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 46451856 - 46451559
Alignment:
| Q |
1 |
ccagatatttgatcaaacaaaccatgtccatttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtg |
100 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451856 |
ccagatatttgatcaaacaaaccctgtccttttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtg |
46451757 |
T |
|
| Q |
101 |
ctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccatattttcatcattattatttattaaaaaggtctcataaattttgacttaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| ||| |
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| T |
46451756 |
ctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccatattatcatcatcattatttattaaaagggtctcataaattttgaccaaat |
46451657 |
T |
|
| Q |
201 |
ttagtactttgcaaaattaat-ttctttcacataattaagaacaaacaaagataattttatttactagtatgctcacctttggtgaacgagtataagt |
297 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46451656 |
ttagtaatttgcaaaattaatcttctttcacataattaagaaaaaataaagataattttatttactactatgctcacctttggtgaacgagtataagt |
46451559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 46344700 - 46344991
Alignment:
| Q |
1 |
ccagatatttgatcaaacaaaccatgtccatttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtg |
100 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344700 |
ccagatatttgatcaaacaaaccctgtccttttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtg |
46344799 |
T |
|
| Q |
101 |
ctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccatattttcatcattattatttattaaaaaggtctcataaattttgacttaat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||| || || ||||||||| | || |
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| T |
46344800 |
ctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccatattttcattatta-aaattaataaaagggcctaataaattttaaacaaaa |
46344898 |
T |
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| Q |
201 |
ttagtactttgcaaaattaatttctttcacataattaagaacaaacaaagataattt-tatttactagtatgctcacctttggtgaacgagtata |
294 |
Q |
| |
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|||| |||||||| || ||| |||| |||| |||| ||| |||||||||| |||| | ||| ||| ||||||||||||||||| ||||||||| |
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| T |
46344899 |
ttagcactttgcataactaa--tcttgcacacaattcagagaaaacaaagatgatttatttttgctactatgctcacctttggtgcacgagtata |
46344991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 46462824 - 46462533
Alignment:
| Q |
1 |
ccagatatttgatcaaacaaaccatgtccatttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462824 |
ccagatatttgatcaaacaaaccctgtccttttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtg |
46462725 |
T |
|
| Q |
101 |
ctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccatattttcatcattattatttattaaaaaggtctcataaattttgacttaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | ||| ||||| || || ||||||||| | || |
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| T |
46462724 |
ctggcccaccaaaagccatcaaatccgaaaattttgtgctcatctgccatattttcattatta-aaattaataaaagggcctaataaattttaaacaaaa |
46462626 |
T |
|
| Q |
201 |
ttagtactttgcaaaattaatttctttcacataattaagaacaaacaaagataattt-tatttactagtatgctcacctttggtgaacgagtata |
294 |
Q |
| |
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|||| |||||||| || ||| |||| |||| |||| ||| |||||||||| |||| | ||| ||| ||||||||||||||||| ||||||||| |
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| T |
46462625 |
ttagcactttgcataactaa--tcttgcacacaattcagagaaaacaaagatgatttatttttgctactatgctcacctttggtgcacgagtata |
46462533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 46471451 - 46471257
Alignment:
| Q |
1 |
ccagatatttgatcaaacaaaccatgtccatttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtg |
100 |
Q |
| |
|
|||||||||||||| |||||||| || || ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46471451 |
ccagatatttgatcgaacaaaccctgcccttttgctaattccacccccattgcagatacaaaaccaatcatagccaaccttccattgattctttcaggtg |
46471352 |
T |
|
| Q |
101 |
ctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccatattttcatcattattatttattaaaaaggtctcataaattttgac |
195 |
Q |
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||| |||||||||||||||||||||||||||||||||||| ||||||||| | | ||||| |||| | ||| | |||||||||| ||||||||| |
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| T |
46471351 |
ctgccccaccaaaagccatcaaatccgaaaactttgtgcttatctgccattatataatcatcattaatcatttagaaggtctcattaattttgac |
46471257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 46466246 - 46466097
Alignment:
| Q |
1 |
ccagatatttgatcaaacaaaccatgtccatttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtg |
100 |
Q |
| |
|
|||||||||||||| |||||||| || || ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46466246 |
ccagatatttgatcgaacaaaccctgcccttttgctaattccacccccattgcagatacaaaaccaatcatagccaaccttccattgattctttcaggtg |
46466147 |
T |
|
| Q |
101 |
ctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccat |
150 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46466146 |
ctgccccaccaaaagccatcaaatccgaaaactttgtgcttatctgccat |
46466097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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