View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_4 (Length: 739)
Name: NF16549_low_4
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 213 - 722
Target Start/End: Original strand, 49915586 - 49916094
Alignment:
| Q |
213 |
ggttggaggcacgataaacagttgtatggaaaattcgcttctaactgatatatgtgaaatttgtaataacatatgtaatattagtatattactgttatac |
312 |
Q |
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| T |
49915586 |
ggttggaggcacgataaacagttgtatggaaaattcgcttctaactgatatatgtggaatttataataacatatgtaatattagtatattactgttatac |
49915685 |
T |
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| Q |
313 |
cagagaatacaacattaagaagggccatgctggtgttacaccaaaaactatgtacgaaaagtcacatgacaaatnnnnnnnngagtatgatcctagatta |
412 |
Q |
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| T |
49915686 |
aagagaatacaacattaagaagggccatg-tggtgttacaccaaaaactatgtacgaaaagtcacatgacaaataaaaaaaagagtatgatcctagatta |
49915784 |
T |
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| Q |
413 |
accacccaatgctcgctttagtgcagcacgttgttctggtgtcaattttgttgggaacttaacctcaaatatgatcctcaaatcacccctatgaccgggt |
512 |
Q |
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| T |
49915785 |
accacccaatgctcgctttagtgcagcacgttgttctggtgtcaattttgttgggaacttaacctcaaatatgatcctcaaatcacccctatgaccgggt |
49915884 |
T |
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| Q |
513 |
tcctttgttattggcattccttcatttgcaacaacaagctcataaccaggactcacaatgtttttcactgggacacttaaactacgtttgtaaagtgttt |
612 |
Q |
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| T |
49915885 |
tcctttgttattggcattccttcatttgcaacaacaagctcataaccaggactcacaatgtttttcactgggacacttaaactacgtttgtaaagtgttt |
49915984 |
T |
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| Q |
613 |
tgatatttactgaagttccaccaatagcttctgctagtgatatcttttgattcacaataaggtcattcccatctctcttgaacaattcatgaggcatctc |
712 |
Q |
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| T |
49915985 |
tgatatttactgaagttccaccaatagcttctgctagtgatatcttttgattcacaataaggtcattcccatctctcttgaacaattcatgaggcttctc |
49916084 |
T |
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| Q |
713 |
atcaatcaca |
722 |
Q |
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| T |
49916085 |
atcaatcaca |
49916094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 49915212 - 49915424
Alignment:
| Q |
4 |
cggtgcaaatgacttttattctcttcaactgttttagtttgcggtgaataaatacgatggacgatagaatattccttcaattttattttaagagagtttc |
103 |
Q |
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| T |
49915212 |
cggtgcaaatgacttttattctcttctactgttttagtttgcggtgaataaatacgatggacgatagaatattccttcaattttattttaagagagtttc |
49915311 |
T |
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| Q |
104 |
taatttccacgttgctttttgtatgcttagcgttactaatgccttaactactctatgtaatattcgtacttgggtctctaggacatatacgtttatctat |
203 |
Q |
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| T |
49915312 |
taatttcaacgttgctttttatatgcttagcgttactaatgccttaactactctatgtaatattcgtacttgggtctttaggacatatacgtttatctat |
49915411 |
T |
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| Q |
204 |
tctacgaaaggtt |
216 |
Q |
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| T |
49915412 |
tctacgaaaggtt |
49915424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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