View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_41 (Length: 305)
Name: NF16549_low_41
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 93 - 286
Target Start/End: Original strand, 7076404 - 7076598
Alignment:
| Q |
93 |
gctgttacaattagaaacagtcacatattaaggaaaagct-gaaacagacacaagaagaagcaaagacacctcctcacactgtttatgttctgttgtctt |
191 |
Q |
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| T |
7076404 |
gctgttacaattagaaacagtcacatattaaggaaaagcttgaaacagacacaagaagaagcaaagacacctcctcacactgtttatgttctgttgtctt |
7076503 |
T |
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| Q |
192 |
ttgtttctctttaatctggtatcttactcattaccttgctccttcttctcttctcctagctgagtttcaatctccagttatgttgaccaataata |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7076504 |
ttgtttctctttaatctggtatcttactcattaccttgctccttcttctcttctcctagctgagtttcaatctctagttatgttgaccaataata |
7076598 |
T |
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