View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16549_low_43 (Length: 291)
Name: NF16549_low_43
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_43 |
 |  |
|
| [»] scaffold0400 (2 HSPs) |
 |  |  |
|
| [»] scaffold0365 (2 HSPs) |
 |  |  |
|
| [»] scaffold0289 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 14483795 - 14484062
Alignment:
| Q |
9 |
catcatcatgattttgcagtttatcatttgtacaaattgtttacatttcatgatttcttttaacccnnnnnnncaaaatgataattcttagtgtttgtta |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14483795 |
catcataatgattttgcagtttatcatttgtacaaattgtttacatttcatgatttcttttaaccctttttttcaaaatgataattcttagtgtttgtta |
14483894 |
T |
 |
| Q |
109 |
cagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggagatat |
208 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14483895 |
cagaacttacatacacaataaacgtaaacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggagatat |
14483994 |
T |
 |
| Q |
209 |
tgtatctacaatgttgcaatcaagttctataggccaaacaattgatgctgtgttgttgactgatatct |
276 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14483995 |
tgtatctacaatgttgcaatcaagttctgtaggccaaacaattgatgctgtgttgttgactgatatct |
14484062 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 82 - 274
Target Start/End: Original strand, 14468871 - 14469063
Alignment:
| Q |
82 |
caaaatgataattcttagtgtttgttacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaat |
181 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
14468871 |
caaaatgataactcttattgtttgttacagaacttgcatacacaatggaagtaaatgagaagtgtgatgtgtatagttttggagtattaaccttggaaat |
14468970 |
T |
 |
| Q |
182 |
acttcttggaaaacatcctggagatattgtatctacaatgttgcaatcaagttctataggccaaacaattgatgctgtgttgttgactgatat |
274 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14468971 |
gcttcttggaaaacatcctggagacattgtatctacaatgttgcaatcaagttctgtaggccaaacaattgatgctgttttgttgactgatat |
14469063 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 82 - 274
Target Start/End: Original strand, 14505123 - 14505315
Alignment:
| Q |
82 |
caaaatgataattcttagtgtttgttacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaat |
181 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14505123 |
caaaatgataactcttagtgtttgctacagaacttgcatatacaatggaagtaaatgagaagtgtgatgtgtatagttttggagtattaagcctggaaat |
14505222 |
T |
 |
| Q |
182 |
acttcttggaaaacatcctggagatattgtatctacaatgttgcaatcaagttctataggccaaacaattgatgctgtgttgttgactgatat |
274 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | ||||||||||| || ||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
14505223 |
acttcttggaaaacatcctggagacattgtatctaagttaatgcaatcaagtactgcaggccaaacaattgatgctatgtttttgactgatat |
14505315 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 14531682 - 14531577
Alignment:
| Q |
107 |
tacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggagat |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||| |||||||||||||||||||| |||| | | ||||||||||| |||||||||| ||||||||| |
|
|
| T |
14531682 |
tacagaacttgcatacacaatggaagtaaatgagaaatgtgatgtgtatagttttgggatattgaccttggaaatactttttggaaaacaccctggagat |
14531583 |
T |
 |
| Q |
207 |
attgta |
212 |
Q |
| |
|
||||| |
|
|
| T |
14531582 |
gttgta |
14531577 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 15033594 - 15033699
Alignment:
| Q |
107 |
tacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggagat |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||| |||||||||| ||||||||| |||||| | ||||||||||| ||||||| || ||||||||| |
|
|
| T |
15033594 |
tacagaacttgcatacacaatggaagtaaatgagaaatgtgatgtgtttagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
15033693 |
T |
 |
| Q |
207 |
attgta |
212 |
Q |
| |
|
|||||| |
|
|
| T |
15033694 |
attgta |
15033699 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 15038173 - 15038278
Alignment:
| Q |
107 |
tacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggagat |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||| |||||||||||| ||||||| |||||| | ||||||||||| ||||||| || ||||||||| |
|
|
| T |
15038173 |
tacagaacttgcatacacaatggaagtaaatgagaaatgtgatgtgtatggttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
15038272 |
T |
 |
| Q |
207 |
attgta |
212 |
Q |
| |
|
|||||| |
|
|
| T |
15038273 |
attgta |
15038278 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 15041735 - 15041839
Alignment:
| Q |
107 |
tacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggagat |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||| |||||||||||||||||||| ||||||| | ||||||||| | ||||||| || ||||||||| |
|
|
| T |
15041735 |
tacagaacttgcatacacaatggaagta-atgagaaatgtgatgtgtatagttttggggtattaaccttggaaatacattttggaaagcaccctggagat |
15041833 |
T |
 |
| Q |
207 |
attgta |
212 |
Q |
| |
|
|||||| |
|
|
| T |
15041834 |
attgta |
15041839 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 15003274 - 15003380
Alignment:
| Q |
106 |
ttacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggaga |
205 |
Q |
| |
|
||||||||||||||||||||||||| ||| | ||||| |||||||||| ||||||||| |||||| | ||||||| ||| ||||||| || |||||||| |
|
|
| T |
15003274 |
ttacagaacttgcatacacaatggaagtaaatgagaaatgtgatgtgtttagttttgggatattaaccttggaaatgctttttggaaagcaccctggaga |
15003373 |
T |
 |
| Q |
206 |
tattgta |
212 |
Q |
| |
|
||||||| |
|
|
| T |
15003374 |
tattgta |
15003380 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 14521583 - 14521477
Alignment:
| Q |
106 |
ttacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggaga |
205 |
Q |
| |
|
||||||||||||||||||||||||| ||| | ||||| |||||||||||||||||||| | |||| | ||||||||||| | ||||| || |||||||| |
|
|
| T |
14521583 |
ttacagaacttgcatacacaatggaagtaaatgagaaatgtgatgtgtatagttttgggattttaaccttggaaatacttttcggaaagcaccctggaga |
14521484 |
T |
 |
| Q |
206 |
tattgta |
212 |
Q |
| |
|
| ||||| |
|
|
| T |
14521483 |
tgttgta |
14521477 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 15012162 - 15012268
Alignment:
| Q |
106 |
ttacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggaga |
205 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||| || ||||| ||||||||||| |||||| | ||||||||||| ||||||| || |||||||| |
|
|
| T |
15012162 |
ttacagaacttgcatacacaatggaagtaaataagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggaga |
15012261 |
T |
 |
| Q |
206 |
tattgta |
212 |
Q |
| |
|
||||||| |
|
|
| T |
15012262 |
tattgta |
15012268 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 7551 - 7678
Alignment:
| Q |
87 |
tgataattcttagtgtttgttacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttc |
186 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||| | ||||||||||| |
|
|
| T |
7551 |
tgataactcttagtgtttgttacagaacttgcatacacaatggaagtaaatgagaagtgtgatgtgtatagttttgggatattaaccttggaaatacttt |
7650 |
T |
 |
| Q |
187 |
ttggaaaacatcctggagatattgtatc |
214 |
Q |
| |
|
||||||| ||||||||||| |||||||| |
|
|
| T |
7651 |
ttggaaagcatcctggagacattgtatc |
7678 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 13945 - 14049
Alignment:
| Q |
108 |
acagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggagata |
207 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||| |||||||||||||||||||| |||||| | ||||||||||| |||||| || ||||||||| |
|
|
| T |
13945 |
acagaacttgcatacacaatggaagtaaatgagaaatgtgatgtgtatagttttgggatattaaccttggaaatactttatggaaagcaccctggagatg |
14044 |
T |
 |
| Q |
208 |
ttgta |
212 |
Q |
| |
|
||||| |
|
|
| T |
14045 |
ttgta |
14049 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 8195 - 8322
Alignment:
| Q |
87 |
tgataattcttagtgtttgttacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttc |
186 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||| | ||||||||||| |
|
|
| T |
8195 |
tgataactcttagtgtttgttacagaacttgcatacacaatggaagtaaatgagaagtgtgatgtgtatagttttgggatattaaccttggaaatacttt |
8294 |
T |
 |
| Q |
187 |
ttggaaaacatcctggagatattgtatc |
214 |
Q |
| |
|
||||||| ||||||||||| |||||||| |
|
|
| T |
8295 |
ttggaaagcatcctggagacattgtatc |
8322 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 14588 - 14692
Alignment:
| Q |
108 |
acagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggagata |
207 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||| |||||||||||||||||||| |||||| | ||||||||||| |||||| || ||||||||| |
|
|
| T |
14588 |
acagaacttgcatacacaatggaagtaaatgagaaatgtgatgtgtatagttttgggatattaaccttggaaatactttatggaaagcaccctggagatg |
14687 |
T |
 |
| Q |
208 |
ttgta |
212 |
Q |
| |
|
||||| |
|
|
| T |
14688 |
ttgta |
14692 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 87 - 270
Target Start/End: Original strand, 17028948 - 17029131
Alignment:
| Q |
87 |
tgataattcttagtgtttgttacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttc |
186 |
Q |
| |
|
|||||| ||| | ||||||||| ||||||||||||||||||||| ||| | |||| ||||||||||||||||| || ||||||| | ||||||||||| |
|
|
| T |
17028948 |
tgataactctcattgtttgttatagaacttgcatacacaatggaagtaaatgagagatgtgatgtgtatagtttcggggtattaaccttggaaatacttt |
17029047 |
T |
 |
| Q |
187 |
ttggaaaacatcctggagatattgtatctacaatgttgcaatcaagttctataggccaaacaattgatgctgtgttgttgactg |
270 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| |||||||||||||| | |||||| || | ||||||| ||| |||||||| |
|
|
| T |
17029048 |
ttggaaagcatcctggagacattgtatctacgttgttgcaatcaagtaccgtaggcctgactagtgatgctatgtcgttgactg |
17029131 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 87 - 270
Target Start/End: Original strand, 17559384 - 17559567
Alignment:
| Q |
87 |
tgataattcttagtgtttgttacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttc |
186 |
Q |
| |
|
|||||| ||| | ||||||||| ||||||||||||||||||||| ||| | |||| ||||||||||||||||| || ||||||| | ||||||||||| |
|
|
| T |
17559384 |
tgataactctcattgtttgttatagaacttgcatacacaatggaagtaaatgagagatgtgatgtgtatagtttcggggtattaaccttggaaatacttt |
17559483 |
T |
 |
| Q |
187 |
ttggaaaacatcctggagatattgtatctacaatgttgcaatcaagttctataggccaaacaattgatgctgtgttgttgactg |
270 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| |||||||||||||| | |||||| || | ||||||| ||| |||||||| |
|
|
| T |
17559484 |
ttggaaagcatcctggagacattgtatctacgttgttgcaatcaagtaccgtaggcctgactagtgatgctatgtcgttgactg |
17559567 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 16173743 - 16173850
Alignment:
| Q |
105 |
gttacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggag |
204 |
Q |
| |
|
|||||||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
16173743 |
gttacagaacttgcatacacaacgaaagtaaccgagaagtgtgatgtgtatagttttggagtattagcattggaaatactgtttggaaaacatcctggag |
16173842 |
T |
 |
| Q |
205 |
atattgta |
212 |
Q |
| |
|
|| ||||| |
|
|
| T |
16173843 |
atgttgta |
16173850 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 14607056 - 14607155
Alignment:
| Q |
107 |
tacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggagat |
206 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| |||||| |
|
|
| T |
14607056 |
tacagaacttgcatacacaacaaaagtgaacgagaagtgtgatgtgtacagttttggagtattagcattggaaatactttttggaaaacatcccggagat |
14607155 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 15664278 - 15664211
Alignment:
| Q |
102 |
tttgttacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtatt |
169 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
15664278 |
tttggtacagaacttgcatacacaatggaagtaaatgagaagtgtgatgtgtatagttttggggtatt |
15664211 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 16026230 - 16026329
Alignment:
| Q |
107 |
tacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggagat |
206 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| |||||| |
|
|
| T |
16026230 |
tacagaacttgcatacacaacaaaagtgaacgagaagtgtgatgtgtacagttttggagtattagcattggaaatactttttggaaaacatcccggagat |
16026329 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 15676108 - 15675994
Alignment:
| Q |
102 |
tttgttacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctg |
201 |
Q |
| |
|
|||| ||||||| |||||||||||||||| || | | |||||||||||||||||||||||| ||||| |||||||||| ||||||||| || | |
|
|
| T |
15676108 |
tttggtacagaatttgcatacacaatggaagtgaatgtgaagtgtgatgtgtatagttttgggatattagcattggaaatactatatggaaaacacccgg |
15676009 |
T |
 |
| Q |
202 |
gagatattgtatcta |
216 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
15676008 |
gagatattatatcta |
15675994 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 16103985 - 16104093
Alignment:
| Q |
107 |
tacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggagat |
206 |
Q |
| |
|
|||||||||||||||||||| | || | ||||||||||||||||||||||| || |||||| |||||| |||| ||||||||||||| |||||| |
|
|
| T |
16103985 |
tacagaacttgcatacacaacaaaagtgaatgagaagtgtgatgtgtatagtttcggggtattagcattggaaacactttttggaaaacatcccggagat |
16104084 |
T |
 |
| Q |
207 |
attgtatct |
215 |
Q |
| |
|
|| ||||| |
|
|
| T |
16104085 |
gttatatct |
16104093 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 17825063 - 17824966
Alignment:
| Q |
107 |
tacagaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggag |
204 |
Q |
| |
|
||||||| ||||||||||||| | || | ||||| |||||||||||||||||||| |||||| |||||| |||| |||||||||| ||||||| |
|
|
| T |
17825063 |
tacagaatatgcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaaaactttttggaaaacaccctggag |
17824966 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 13424 - 13319
Alignment:
| Q |
110 |
agaacttgcatacacaatggacgtagacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggagatatt |
209 |
Q |
| |
|
|||| |||||||||| ||||| || | |||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||| | |||||||||||| |
|
|
| T |
13424 |
agaatttgcatacactatggaagtgaatgagaagtgtgatgtgtatagttttggggtatt-agcatggaaatactatatggaaaaaaccctggagatatt |
13326 |
T |
 |
| Q |
210 |
gtatcta |
216 |
Q |
| |
|
||||||| |
|
|
| T |
13325 |
gtatcta |
13319 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University