View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_44 (Length: 289)
Name: NF16549_low_44
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 15574790 - 15574541
Alignment:
| Q |
14 |
acaagatacttgcatgtttactttctccaatgatgataagcctttcattttgaacccttcttcaaaccaaagtcatagtaaagctttagatcttcaacta |
113 |
Q |
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| T |
15574790 |
acaagatacttgcatgtttactttctccaacgatgataagcctt---------------cttcaaaccaaagtcatagtaaagctttagatcttcaacta |
15574706 |
T |
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| Q |
114 |
ggtcttaatttgcagtcaaatacaataagaagctctttgaaaaggtcgtagtttggtataggatccaaagtaatagtttcattgttttccttgatattgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15574705 |
ggtcttaatttgcagtcaaatacaataagaagctctttgaaaaggtcgtagtttggtataggatccaaagtaatagtttcattgttttccttgatattgt |
15574606 |
T |
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| Q |
214 |
ttgattatgaacaattctcaaacatcaaggaaaaggaaattagaagaaaaatattcactattcat |
278 |
Q |
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| T |
15574605 |
ttgattatgaacaattctcaaacatcaaggaaaaggaaattagaagaaaaaatttcactattcat |
15574541 |
T |
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