View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16549_low_45 (Length: 286)

Name: NF16549_low_45
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16549_low_45
NF16549_low_45
[»] chr5 (1 HSPs)
chr5 (19-279)||(28152063-28152320)
[»] chr6 (6 HSPs)
chr6 (162-201)||(12877811-12877850)
chr6 (162-198)||(20759303-20759339)
chr6 (164-201)||(14579001-14579038)
chr6 (162-201)||(2936651-2936690)
chr6 (162-201)||(3836144-3836183)
chr6 (161-199)||(15951541-15951579)
[»] chr4 (7 HSPs)
chr4 (162-201)||(6685778-6685817)
chr4 (162-201)||(31768285-31768324)
chr4 (161-201)||(13250994-13251034)
chr4 (162-201)||(572234-572273)
chr4 (162-201)||(580637-580676)
chr4 (162-201)||(6664424-6664463)
chr4 (162-201)||(6682323-6682362)
[»] chr7 (3 HSPs)
chr7 (162-203)||(38414115-38414156)
chr7 (162-201)||(37006261-37006300)
chr7 (198-271)||(37006353-37006426)
[»] chr1 (2 HSPs)
chr1 (162-199)||(48715079-48715116)
chr1 (161-201)||(27793839-27793879)
[»] chr2 (1 HSPs)
chr2 (165-201)||(80466-80502)
[»] scaffold0321 (1 HSPs)
scaffold0321 (162-201)||(17970-18009)
[»] scaffold0019 (1 HSPs)
scaffold0019 (162-201)||(174071-174110)
[»] chr3 (2 HSPs)
chr3 (162-201)||(6240659-6240698)
chr3 (162-201)||(26361893-26361932)
[»] scaffold0933 (1 HSPs)
scaffold0933 (161-201)||(1586-1626)
[»] chr8 (2 HSPs)
chr8 (162-197)||(29275385-29275420)
chr8 (167-201)||(29260363-29260397)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 28152320 - 28152063
Alignment:
Q  19 aagaagttgagttgagtgattttgctaagcgaggagatgtgctagcttagcgaatcgagtcggaaagtgaagtctaccaacaacatgtcaccattcgctg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||    
T  28152320 aagaagttgagttgagtgattttgctaagcgaggagatgtgctagcttagcgaattgagtcggaaagtgaagtctaccaaca---tgtcaccattcgctg 28152224  T
Q  119 cagcagattataaatcacgtataaaagcatggcaggttcgtgatgttgtaaattttgagtatatttcaaaagtttcaaatattatcatatgagtaattat 218  Q
    ||| ||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28152223 cagtagattataaatcacgtagaaaagtatggcgggttcgtggtgttgtaaattttgagtatatttcaaaagtttcaaatattatcatatgagtaattat 28152124  T
Q  219 tgtgtttgacttgggtttctagatatgcttttaattccaaattgtgttaccacctttgctt 279  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  28152123 tgtgtttgacttgggtttctagacatgcttttaattccaaactgtgttaccacctttgctt 28152063  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 12877850 - 12877811
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12877850 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 12877811  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 20759339 - 20759303
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaat 198  Q
    |||||||||||||||||||||||||||||||||||||    
T  20759339 tgttgtaaattttgagtatatttcaaaagtttcaaat 20759303  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 14579001 - 14579038
Alignment:
Q  164 ttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  14579001 ttgtaaattttgattatatttcaaaagtttcaaatatt 14579038  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 2936690 - 2936651
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  2936690 tgttgtaaattttgattatatttcaaaaatttcaaatatt 2936651  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 3836183 - 3836144
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  3836183 tgttgtaaattttgaacatatttcaaaagtttcaaatatt 3836144  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 15951541 - 15951579
Alignment:
Q  161 atgttgtaaattttgagtatatttcaaaagtttcaaata 199  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  15951541 atgttctaaattttgagtatatttcaaaagttttaaata 15951579  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 6685778 - 6685817
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6685778 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 6685817  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 31768324 - 31768285
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31768324 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 31768285  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 13251034 - 13250994
Alignment:
Q  161 atgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  13251034 atgttgtaaattttgattatatttcaaaagtttcaaatatt 13250994  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 572273 - 572234
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  572273 tgttgtaaattttgagtatatttcaaaagtttctaatatt 572234  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 580676 - 580637
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  580676 tgttgtaaattttgagtatatttcaaaagttttaaatatt 580637  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 6664463 - 6664424
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  6664463 tgttgtaaattttgagtgtatttcaaaagtttcaaatatt 6664424  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 6682323 - 6682362
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  6682323 tgttataaattttgagtatattttaaaagtttcaaatatt 6682362  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 38414115 - 38414156
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaatattat 203  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  38414115 tgttgtaaattttgagtatatttcaaaagttttaaatattat 38414156  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 37006261 - 37006300
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  37006261 tgttgtaaattttgagtatattttaaaagtttcaaatatt 37006300  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 37006353 - 37006426
Alignment:
Q  198 tattatcatatgagtaattattgtgtttgacttgggtttctagatatgcttttaattccaaattgtgttaccac 271  Q
    ||||||||||| | |||||||  |||||||||||  ||| |||| ||| ||||||||||||||| ||| |||||    
T  37006353 tattatcatattattaattataatgtttgacttgattttgtagacatgtttttaattccaaattttgtaaccac 37006426  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 48715116 - 48715079
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaata 199  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48715116 tgttgtaaattttgagtatatttcaaaagtttcaaata 48715079  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 27793879 - 27793839
Alignment:
Q  161 atgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  27793879 atgttgtaaattttgagtatatttcaaaagttttaaatatt 27793839  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 80466 - 80502
Alignment:
Q  165 tgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    |||||||||||||||||||||||||||||||||||||    
T  80466 tgtaaattttgagtatatttcaaaagtttcaaatatt 80502  T

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Target: scaffold0321 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 17970 - 18009
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  17970 tgttgtaaattttaagtatatttcaaaagtttcaaatatt 18009  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 174071 - 174110
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  174071 tgttgtaaattttgattatatttcaaaagtttcaaatatt 174110  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 6240698 - 6240659
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  6240698 tgttgtaaattttgagtatatttcaaaagttttaaatatt 6240659  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 26361893 - 26361932
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  26361893 tgttgtaatttttgagtatatttcaaaagtttcaaatatt 26361932  T

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Target: scaffold0933 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 1626 - 1586
Alignment:
Q  161 atgttgtaaattttgagtatatttcaaaagtttcaaatatt 201  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  1626 atgttgtaaattttgattatattttaaaagtttcaaatatt 1586  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 197
Target Start/End: Original strand, 29275385 - 29275420
Alignment:
Q  162 tgttgtaaattttgagtatatttcaaaagtttcaaa 197  Q
    |||||||||||||| |||||||||||||||||||||    
T  29275385 tgttgtaaattttgtgtatatttcaaaagtttcaaa 29275420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 29260363 - 29260397
Alignment:
Q  167 taaattttgagtatatttcaaaagtttcaaatatt 201  Q
    ||||||||| |||||||||||||||||||||||||    
T  29260363 taaattttgtgtatatttcaaaagtttcaaatatt 29260397  T

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