View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16549_low_46 (Length: 285)

Name: NF16549_low_46
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16549_low_46
NF16549_low_46
[»] chr8 (14 HSPs)
chr8 (16-271)||(6288553-6288808)
chr8 (71-271)||(6321238-6321438)
chr8 (48-271)||(6274339-6274562)
chr8 (74-271)||(7458937-7459134)
chr8 (68-271)||(6331743-6331946)
chr8 (74-259)||(7471335-7471520)
chr8 (74-271)||(6363041-6363238)
chr8 (74-179)||(6263177-6263282)
chr8 (74-271)||(6352102-6352299)
chr8 (74-271)||(6423946-6424143)
chr8 (74-172)||(6390840-6390938)
chr8 (74-172)||(6410044-6410142)
chr8 (74-122)||(6450749-6450797)
chr8 (74-122)||(6456934-6456982)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 6288553 - 6288808
Alignment:
Q  16 atgaataactcagacatttaaactatgtttggctctctaatcttgtgaatagaatttgtaccagtggctgataagttggtgatagcatgagtcatttaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6288553 atgaataactcagacatttaaactatgtttggctctctaatcttgggaatagaatttgtaccagtggctgataagttggtgatagcatgagtcatttaca 6288652  T
Q  116 atcacataattcttggcaagtagccaaatagaagattcaacaccttcacttgcaggcaagtagatatcactgataggaccaaagcgatcaccttttggat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6288653 atcacataattcttggcaagtagccaaatagaagattcaacaccttcacttgcaggcaagtagatatcactgataggatcaaagcgatcaccttttggat 6288752  T
Q  216 tcgggctacttagctcgatggctaatggcttcaaagttccatcattttgtaagaaa 271  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6288753 tcgggctacttagctcgatggctaatggcttaaaagttccatcattttgtaagaaa 6288808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 71 - 271
Target Start/End: Original strand, 6321238 - 6321438
Alignment:
Q  71 ttgtaccagtggctgataagttggtgatagcatgagtcatttacaatcacataattcttggcaagtagccaaatagaagattcaacaccttcacttgcag 170  Q
    |||||||||||||||| ||||||||||    | |||||||||||||| ||||||  ||||||||| ||||||||||||||||||||||||||  ||||||    
T  6321238 ttgtaccagtggctgacaagttggtgaacagaagagtcatttacaataacataagccttggcaaggagccaaatagaagattcaacaccttcctttgcag 6321337  T
Q  171 gcaagtagatatcactgataggaccaaagcgatcaccttttggattcgggctacttagctcgatggctaatggcttcaaagttccatcattttgtaagaa 270  Q
    ||||||| | |||||| | ||||||||||| |||| | |  ||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6321338 gcaagtaaacatcactaacaggaccaaagctatcagcctgaggatgtgggctacttagctcaatggctaatggcttcaaagttccatcattttgtaagaa 6321437  T
Q  271 a 271  Q
    |    
T  6321438 a 6321438  T

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Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 271
Target Start/End: Original strand, 6274339 - 6274562
Alignment:
Q  48 ctctctaatcttgtgaatagaatttgtaccagtggctgataagttggtgatagcatgagtcatttacaatcacataattcttggcaagtagccaaataga 147  Q
    |||| ||||||| | ||| |||||| ||||| |||||||| |||||||||| ||| ||||| |||||||  || ||   ||||||||| |||||||||||    
T  6274339 ctctataatcttttcaattgaatttataccaatggctgatgagttggtgatggcaagagtcgtttacaacaacgtatgccttggcaaggagccaaataga 6274438  T
Q  148 agattcaacaccttcacttgcaggcaagtagatatcactgataggaccaaagcgatcaccttttggattcgggctacttagctcgatggctaatggcttc 247  Q
    || ||||||||||||||||||||||||||| |||||||| | ||||||||||| |||| | |  ||||  |||||||||||||| ||||| || ||||||    
T  6274439 agcttcaacaccttcacttgcaggcaagtaaatatcactaacaggaccaaagctatcagcctgaggatgtgggctacttagctcaatggccaacggcttc 6274538  T
Q  248 aaagttccatcattttgtaagaaa 271  Q
    ||||||||||||||||||||||||    
T  6274539 aaagttccatcattttgtaagaaa 6274562  T

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Target: chr8; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 74 - 271
Target Start/End: Original strand, 7458937 - 7459134
Alignment:
Q  74 taccagtggctgataagttggtgatagcatgagtcatttacaatcacataattcttggcaagtagccaaatagaagattcaacaccttcacttgcaggca 173  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||  ||||||  ||||||||| |||||||| |||| |||||||||||||||||||||||    
T  7458937 taccaatggctgacaagttggtggtagcatgagtcatttacaacgacataagccttggcaaggagccaaattgaagcttcaacaccttcacttgcaggca 7459036  T
Q  174 agtagatatcactgataggaccaaagcgatcaccttttggattcgggctacttagctcgatggctaatggcttcaaagttccatcattttgtaagaaa 271  Q
    |||| | || ||| | |||||| || | ||||||||  || |  || |||||||| || ||||| |||||||||||||||||||||||||| ||||||    
T  7459037 agtaaacattactaacaggacctaaactatcaccttgagggtgtggcctacttagttcaatggccaatggcttcaaagttccatcattttgcaagaaa 7459134  T

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Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 271
Target Start/End: Original strand, 6331743 - 6331946
Alignment:
Q  68 aatttgtaccagtggctgataagttggtgatagcatgagtcatttacaatcacataattcttggcaagtagccaaatagaagattcaacaccttcacttg 167  Q
    |||| |||||||||||||| |||||| ||| | || |||||||||||||  || |||   |||||||||||||||||||||| |||||||||||||||||    
T  6331743 aattcgtaccagtggctgacaagttgatgaaaacaggagtcatttacaacaacgtaagctttggcaagtagccaaatagaagcttcaacaccttcacttg 6331842  T
Q  168 caggcaagtagatatcactgataggaccaaagcgatcaccttttggattcgggctacttagctcgatggctaatggcttcaaagttccatcattttgtaa 267  Q
    |||||||||| | || ||| | ||||||| | | |||  |||  ||||  ||  |||||||||| ||||| |||||||||||||||||||||||||||||    
T  6331843 caggcaagtaaacattactaacaggaccataactatcttcttgaggatgtggcttacttagctcaatggccaatggcttcaaagttccatcattttgtaa 6331942  T
Q  268 gaaa 271  Q
    ||||    
T  6331943 gaaa 6331946  T

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Target: chr8; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 74 - 259
Target Start/End: Original strand, 7471335 - 7471520
Alignment:
Q  74 taccagtggctgataagttggtgatagcatgagtcatttacaatcacataattcttggcaagtagccaaatagaagattcaacaccttcacttgcaggca 173  Q
    ||||| ||||||| |||||||||||||||||||||||||||||  ||||||  ||||||||| |||||||| |||| ||| || ||||||||||| ||||    
T  7471335 taccaatggctgacaagttggtgatagcatgagtcatttacaacaacataagccttggcaaggagccaaattgaagcttccacgccttcacttgcgggca 7471434  T
Q  174 agtagatatcactgataggaccaaagcgatcaccttttggattcgggctacttagctcgatggctaatggcttcaaagttccatca 259  Q
    |||| | || ||| | ||||||||| | ||||||||  || |  || |||||||| || ||||| |||||||||||||||||||||    
T  7471435 agtaaacattactaacaggaccaaaactatcaccttgagggtgtggcctacttagttcaatggccaatggcttcaaagttccatca 7471520  T

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Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 271
Target Start/End: Original strand, 6363041 - 6363238
Alignment:
Q  74 taccagtggctgataagttggtgatagcatgagtcatttacaatcacataattcttggcaagtagccaaatagaagattcaacaccttcacttgcaggca 173  Q
    ||||| ||||| | |||||||||||| ||||| ||||||||||| || |||  ||||||||| |||||||| |||| |||||||||||||||||||||||    
T  6363041 taccaatggctaacaagttggtgataacatgaatcatttacaattacgtaagccttggcaaggagccaaattgaagcttcaacaccttcacttgcaggca 6363140  T
Q  174 agtagatatcactgataggaccaaagcgatcaccttttggattcgggctacttagctcgatggctaatggcttcaaagttccatcattttgtaagaaa 271  Q
    |||| |  |  || | ||||||||| | ||||||||  || |  || |||||||| || ||||| |||||||||||||||||||||| ||| ||||||    
T  6363141 agtaaactttgctaacaggaccaaaactatcaccttgagggtgtggcctacttagttcaatggccaatggcttcaaagttccatcatcttgcaagaaa 6363238  T

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Target: chr8; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 6263177 - 6263282
Alignment:
Q  74 taccagtggctgataagttggtgatagcatgagtcatttacaatcacataattcttggcaagtagccaaatagaagattcaacaccttcacttgcaggca 173  Q
    ||||||||||||| |||||||||| |||||||||||||||| || ||||||  |||||||||||||||||  | || ||||||||||||| |||||||||    
T  6263177 taccagtggctgacaagttggtgaaagcatgagtcatttactataacataagccttggcaagtagccaaaccgtagcttcaacaccttcaattgcaggca 6263276  T
Q  174 agtaga 179  Q
    ||||||    
T  6263277 agtaga 6263282  T

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Target: chr8; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 74 - 271
Target Start/End: Original strand, 6352102 - 6352299
Alignment:
Q  74 taccagtggctgataagttggtgatagcatgagtcatttacaatcacataattcttggcaagtagccaaatagaagattcaacaccttcacttgcaggca 173  Q
    ||||| ||||||| |||||| |||||||| |||||||||||||  ||| ||  ||||||||| |||||||| |||| |||||||||||||||||| ||||    
T  6352102 taccaatggctgacaagttgatgatagcaggagtcatttacaacaacaaaagccttggcaaggagccaaattgaagcttcaacaccttcacttgcgggca 6352201  T
Q  174 agtagatatcactgataggaccaaagcgatcaccttttggattcgggctacttagctcgatggctaatggcttcaaagttccatcattttgtaagaaa 271  Q
    |||| | ||  || | ||||||||| | ||||||||  || |  || || ||||| || ||||| | |||||||||||||||||||| ||| ||||||    
T  6352202 agtaaacattgctaacaggaccaaaactatcaccttgagggtgtggcctgcttagttcaatggccagtggcttcaaagttccatcatcttgcaagaaa 6352299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 74 - 271
Target Start/End: Original strand, 6423946 - 6424143
Alignment:
Q  74 taccagtggctgataagttggtgatagcatgagtcatttacaatcacataattcttggcaagtagccaaatagaagattcaacaccttcacttgcaggca 173  Q
    ||||| ||||| | ||||||||||| ||| |||||||||||||  ||||||   || ||||||||||||||||||| ||||||||||||||||||||| |    
T  6423946 taccaatggctaacaagttggtgatggcaagagtcatttacaactacataagctttagcaagtagccaaatagaagcttcaacaccttcacttgcaggga 6424045  T
Q  174 agtagatatcactgataggaccaaagcgatcaccttttggattcgggctacttagctcgatggctaatggcttcaaagttccatcattttgtaagaaa 271  Q
    |||| |  ||||| | ||| ||| | | |||| | |  ||||  ||  |||||||||| || || | |||||| ||||||||||||||||| ||||||    
T  6424046 agtaaacttcactaacaggtccataactatcatcgtcaggatgtggcttacttagctcaatcgccagtggctttaaagttccatcattttgcaagaaa 6424143  T

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Target: chr8; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 6390840 - 6390938
Alignment:
Q  74 taccagtggctgataagttggtgatagcatgagtcatttacaatcacataattcttggcaagtagccaaatagaagattcaacaccttcacttgcaggc 172  Q
    ||||||||||||||||||||||||||||||| |||||| ||||   | |||  |||||||||  ||||||| ||||  |||||||||||||||||||||    
T  6390840 taccagtggctgataagttggtgatagcatgcgtcattcacaacagcgtaagccttggcaaggtgccaaattgaagcatcaacaccttcacttgcaggc 6390938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 6410044 - 6410142
Alignment:
Q  74 taccagtggctgataagttggtgatagcatgagtcatttacaatcacataattcttggcaagtagccaaatagaagattcaacaccttcacttgcaggc 172  Q
    ||||| |||||||||||||| |||||||| | |||||||||||   | |||  |||||||||  ||||||| ||||  |||||||||||| ||||||||    
T  6410044 taccaatggctgataagttgatgatagcaggcgtcatttacaacagcgtaagccttggcaaggcgccaaattgaagcatcaacaccttcagttgcaggc 6410142  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 6450749 - 6450797
Alignment:
Q  74 taccagtggctgataagttggtgatagcatgagtcatttacaatcacat 122  Q
    ||||| ||||| || ||||| ||||||||||||||||||||||| ||||    
T  6450749 taccaatggctcatgagttgatgatagcatgagtcatttacaattacat 6450797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 6456934 - 6456982
Alignment:
Q  74 taccagtggctgataagttggtgatagcatgagtcatttacaatcacat 122  Q
    ||||| |||||||| ||||| ||||||||||| ||||||||||| ||||    
T  6456934 taccaatggctgatgagttgatgatagcatgaatcatttacaatgacat 6456982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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