View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16549_low_47 (Length: 283)

Name: NF16549_low_47
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16549_low_47
NF16549_low_47
[»] chr2 (3 HSPs)
chr2 (23-251)||(16662750-16662978)
chr2 (110-209)||(43624684-43624783)
chr2 (23-133)||(7541408-7541518)
[»] chr4 (1 HSPs)
chr4 (27-228)||(30774441-30774642)
[»] chr1 (3 HSPs)
chr1 (25-204)||(15594225-15594404)
chr1 (23-224)||(29465037-29465238)
chr1 (24-141)||(34467653-34467770)
[»] chr7 (12 HSPs)
chr7 (23-137)||(8615900-8616014)
chr7 (23-132)||(13334239-13334348)
chr7 (25-228)||(8586484-8586687)
chr7 (23-228)||(10495149-10495354)
chr7 (32-138)||(6788706-6788812)
chr7 (106-206)||(3146535-3146635)
chr7 (100-226)||(17267198-17267324)
chr7 (53-132)||(8666634-8666713)
chr7 (103-206)||(17259498-17259601)
chr7 (33-115)||(27849045-27849127)
chr7 (23-51)||(8646065-8646093)
chr7 (33-125)||(27831756-27831848)
[»] chr8 (1 HSPs)
chr8 (106-206)||(43744084-43744184)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 16662978 - 16662750
Alignment:
Q  23 tggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16662978 tggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggt 16662879  T
Q  123 tatcgtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaaagcatacatccaagcgatggcca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16662878 tatcgtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaaagcatacatccaagggatggcca 16662779  T
Q  223 cgaggaacacttggaagaccggaaagcct 251  Q
    |||||||||||||||||||||||||||||    
T  16662778 cgaggaacacttggaagaccggaaagcct 16662750  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 209
Target Start/End: Original strand, 43624684 - 43624783
Alignment:
Q  110 ctttgtcattggttatcgtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaaagcatacatc 209  Q
    ||||||| ||||| || || ||||||||| || | || |||||| |||| |  || ||||| ||||||||||| ||| ||||||| ||||||||||||||    
T  43624684 ctttgtccttggtaattgtaatctcattcctattaccagtggatttttctttagcagaaacggttaagatgccatttacatcgatggcaaagcatacatc 43624783  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 7541408 - 7541518
Alignment:
Q  23 tggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggt 122  Q
    |||||||||||||||||||||  ||||||  | |||| | || |||||||||||| || |||| ||| ||  | || || || |||||||||| ||||||    
T  7541408 tggccttccttaggaatttcttgtcttcaatacggtatttctcagcttcttgaattaactttttaatatcctcactcgacaatctttctttgtgattggt 7541507  T
Q  123 tatcgtgatct 133  Q
    |||||| ||||    
T  7541508 tatcgtaatct 7541518  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 30774441 - 30774642
Alignment:
Q  27 cttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggttatc 126  Q
    |||||||||||||||||||||||||||| |||||||  ||||||||||||||| ||| | ||||||  |||||||||||||||||||||| |||||||||    
T  30774441 cttccttaggaatttctcatcttcagcacggtactctctagcttcttgaatcattttgttaatttcttctctggataacctttctttgtcgttggttatc 30774540  T
Q  127 gtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaaagcatacatccaagcgatggccacgag 226  Q
    |||||||||||| || | || |||||| |||||   || |||||| | |  || || ||||| | |||||  ||||||||||||||  | ||||||||||    
T  30774541 gtgatctcattcatattgccagtggatttttccatagcagaaacattcagtataccattttcgttgatagtgaagcatacatccaaaggttggccacgag 30774640  T
Q  227 ga 228  Q
    ||    
T  30774641 ga 30774642  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 15594225 - 15594404
Alignment:
Q  25 gccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggtta 124  Q
    |||||||||||||||||||||||||||||| | || ||||  ||||||||||||| ||||| ||||||   |   || ||||||||||||||||||||||    
T  15594225 gccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaatttcatatgctgacaacctttctttgtcattggtta 15594324  T
Q  125 tcgtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaaagcat 204  Q
    | |||||||| ||  || | || |||||| ||||||   | |||||||| | |||  | |||||||||||||||||||||    
T  15594325 ttgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcaggatagcattttcatcgatagcaaagcat 15594404  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 29465037 - 29465238
Alignment:
Q  23 tggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggt 122  Q
    |||||||||||| ||||| |  ||||||  ||||||| | || |||||||| ||||| |||||||||||| |   | ||||||||||||||| |||| ||    
T  29465037 tggccttccttacgaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgataacctttctttgccattagt 29465136  T
Q  123 tatcgtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaaagcatacatccaagcgatggcca 222  Q
     || |||||| ||||| || |  | || ||| ||||||  || | |||||||| |||||| |||||||| || | ||||||||| |||||| | ||||||    
T  29465137 aatggtgatcacattcatattgtcagtagatatttccttagcagtaacagttaggatgccattttcatcaatggaaaagcatacctccaagggctggcca 29465236  T
Q  223 cg 224  Q
    ||    
T  29465237 cg 29465238  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 34467770 - 34467653
Alignment:
Q  24 ggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggtt 123  Q
    ||||||||||| |||||||| ||||||| || |||| |||| ||||||| |||||| || |||||||||   | | || |||||| ||||||||||||||    
T  34467770 ggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttcttttgtcgacaaccttcctttgtcattggtt 34467671  T
Q  124 atcgtgatctcattctta 141  Q
    || || |||| |||||||    
T  34467670 attgtaatcttattctta 34467653  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 8615900 - 8616014
Alignment:
Q  23 tggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggt 122  Q
    ||||||||||||||||||| |||||||||||  |||||||||  ||||||||||||| ||||| ||||||  |    |||||||||||||||||||||||    
T  8615900 tggccttccttaggaatttttcatcttcagcgcggtactcctctgcttcttgaatcagttttttaatttcatcagccgataacctttctttgtcattggt 8615999  T
Q  123 tatcgtgatctcatt 137  Q
    |||||| || |||||    
T  8616000 tatcgttatttcatt 8616014  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 13334348 - 13334239
Alignment:
Q  23 tggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggt 122  Q
    |||||||||||| |||||||| ||||||  ||||||| ||||||||||||| ||||| |||||||||||| |   | |||||||||||||||||||| ||    
T  13334348 tggccttccttaagaatttcttatcttcgacatggtattccttagcttctttaatcattttttcaatttctaacattgataacctttctttgtcattagt 13334249  T
Q  123 tatcgtgatc 132  Q
     || ||||||    
T  13334248 aatggtgatc 13334239  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 8586687 - 8586484
Alignment:
Q  25 gccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggtta 124  Q
    ||||||||||||||||||| ||| |||||  ||||| |||  ||||||||||||| | ||| ||||||  |    |||||||||||||||||||||||||    
T  8586687 gccttccttaggaatttctgatcctcagcgaggtacacctctgcttcttgaatcagtcttttaatttcatcagccgataacctttctttgtcattggtta 8586588  T
Q  125 tcgtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaaagcatacatccaagcgatggccacg 224  Q
    |||| || || ||  || | || | |||| ||||||  || |||||||||| ||| || ||||||||||| |  |||||||| || ||| |||| |||||    
T  8586587 tcgttatttcgtttgtattgccagaggatatttccttcgcagaaacagttaggataccattttcatcgatggtgaagcatacctcaaagggatgcccacg 8586488  T
Q  225 agga 228  Q
    ||||    
T  8586487 agga 8586484  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 10495354 - 10495149
Alignment:
Q  23 tggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggt 122  Q
    |||||||||||| |||||||  ||||||  ||||||| | ||||||||||| ||||| ||||| |||||| |   | || ||||||||||||||||| ||    
T  10495354 tggccttccttaagaatttcatatcttcgacatggtatttcttagcttctttaatcatttttttaatttctaacattgacaacctttctttgtcattagt 10495255  T
Q  123 tatcgtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaaagcatacatccaagcgatggcca 222  Q
     || |||||| | ||| || | || || ||| | ||||  || | |||||| | |||||| |||||||| || | ||||||||| |||||| | ||||||    
T  10495254 aatggtgatcgcgttcatattgcctgtagatatatccttagcagtaacagtcaggatgccattttcatcaatggaaaagcatacctccaagggctggcca 10495155  T
Q  223 cgagga 228  Q
    ||||||    
T  10495154 cgagga 10495149  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 6788706 - 6788812
Alignment:
Q  32 ttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggttatcgtgat 131  Q
    |||||||||||| ||||||| |  |||| | || |||||||| ||||||||||| ||||||| | ||  | ||||||||||||| ||||||||| || ||    
T  6788706 ttaggaatttcttatcttcaacgaggtaattctcagcttctttaatcaattttttaatttcgtcactacacaacctttctttgtaattggttatggtaat 6788805  T
Q  132 ctcattc 138  Q
    |||||||    
T  6788806 ctcattc 6788812  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 206
Target Start/End: Original strand, 3146535 - 3146635
Alignment:
Q  106 ctttctttgtcattggttatcgtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaaagcata 205  Q
    |||||||||||||| ||||  || ||||||||| |||| || |||||| |||| |  || |||||| |||||||||| ||||||| ||||| ||||||||    
T  3146535 ctttctttgtcattagttactgtaatctcattcgtactaccagtggatttttcattagcagaaacaattaagatgccattttcattgatagtaaagcata 3146634  T
Q  206 c 206  Q
    |    
T  3146635 c 3146635  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 226
Target Start/End: Original strand, 17267198 - 17267324
Alignment:
Q  100 gataacctttctttgtcattggttatcgtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaa 199  Q
    ||||||||| |||||||||||||||| || |||||||||||||| || |||||| | |||   || ||||| || || || || |||| ||||| | |||    
T  17267198 gataaccttcctttgtcattggttattgtaatctcattcttactaccagtggatttgtccatagcagaaactgtcaaaataccattttgatcgacatcaa 17267297  T
Q  200 agcatacatccaagcgatggccacgag 226  Q
    |||||||||| ||   |||||||||||    
T  17267298 agcatacatcaaaagaatggccacgag 17267324  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 8666634 - 8666713
Alignment:
Q  53 catggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggttatcgtgatc 132  Q
    ||||||| | || |||||||| ||||| ||||||||| ||||   | || ||||||||||||||||||||||| ||||||    
T  8666634 catggtatttctcagcttctttaatcattttttcaatgtcgaacattgacaacctttctttgtcattggttatggtgatc 8666713  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 206
Target Start/End: Original strand, 17259498 - 17259601
Alignment:
Q  103 aacctttctttgtcattggttatcgtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaaagc 202  Q
    |||||| |||||||||||||||| || |||||||||||||| || |||||| | |||   || ||||| || || || || |||| ||||||| ||||||    
T  17259498 aaccttcctttgtcattggttattgtaatctcattcttactgccagtggatttgtccatagcagaaactgtcaaaataccattttgatcgatatcaaagc 17259597  T
Q  203 atac 206  Q
    ||||    
T  17259598 atac 17259601  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 27849127 - 27849045
Alignment:
Q  33 taggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgt 115  Q
    ||||||||||||||||||| || |||  | || ||||||||||||||| |||| ||||||  || | |||| |||||||||||    
T  27849127 taggaatttctcatcttcatcacggtggttctcagcttcttgaatcaactttttaatttcttctgttgatagcctttctttgt 27849045  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 8646065 - 8646093
Alignment:
Q  23 tggccttccttaggaatttctcatcttca 51  Q
    |||||||||||||||||||||||||||||    
T  8646065 tggccttccttaggaatttctcatcttca 8646093  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 27831848 - 27831756
Alignment:
Q  33 taggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggttat 125  Q
    |||||||||||||||||||||| |||| |  | |||||||| ||||| ||| | ||||||  || | ||||  |||||||||| |||||||||    
T  27831848 taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaattggttat 27831756  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 206
Target Start/End: Original strand, 43744084 - 43744184
Alignment:
Q  106 ctttctttgtcattggttatcgtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaaagcata 205  Q
    |||||||||| ||| ||||| || ||||||||| |||| ||  ||||||| || |  || |||||||||||||| || ||||||||||||||| ||||||    
T  43744084 ctttctttgttattagttattgtaatctcattcatactaccactggatctgtcataagcagaaacagttaagattccattttcatcgatagcatagcata 43744183  T
Q  206 c 206  Q
    |    
T  43744184 c 43744184  T

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