View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16549_low_51 (Length: 257)

Name: NF16549_low_51
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16549_low_51
NF16549_low_51
[»] chr7 (10 HSPs)
chr7 (4-241)||(22063872-22064105)
chr7 (6-218)||(22070358-22070566)
chr7 (7-241)||(22100723-22100953)
chr7 (60-213)||(22081120-22081273)
chr7 (144-219)||(22064348-22064423)
chr7 (144-212)||(6864559-6864627)
chr7 (155-215)||(20352342-20352402)
chr7 (144-215)||(20133068-20133139)
chr7 (149-215)||(20374260-20374326)
chr7 (141-214)||(18982668-18982741)
[»] scaffold0867 (1 HSPs)
scaffold0867 (7-241)||(4279-4509)
[»] chr4 (4 HSPs)
chr4 (82-211)||(11970663-11970792)
chr4 (144-208)||(11981426-11981490)
chr4 (144-213)||(53775099-53775168)
chr4 (144-212)||(3560662-3560730)
[»] chr1 (1 HSPs)
chr1 (152-208)||(15961485-15961541)
[»] chr2 (2 HSPs)
chr2 (144-213)||(5436567-5436636)
chr2 (142-213)||(20712264-20712333)
[»] scaffold0097 (1 HSPs)
scaffold0097 (142-213)||(16103-16172)
[»] chr6 (1 HSPs)
chr6 (144-187)||(20770933-20770976)
[»] chr5 (2 HSPs)
chr5 (168-211)||(18964579-18964622)
chr5 (144-188)||(29820938-29820982)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 22064105 - 22063872
Alignment:
Q  4 aagatgaaatacataattggttcaaagatttccaaatcgctaattaacaatagttgatacataatcattcaataatacaatcaaagtcattataagaaaa 103  Q
    |||||||||||||||||||||||||||||||||||||||    ||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||    
T  22064105 aagatgaaatacataattggttcaaagatttccaaatcg----ttaacaatagccgatacataatcattcaataatacaatcaaagtcatcataagaaaa 22064010  T
Q  104 tgagcacacaacttattatatagcatacatatactagcaaaaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctt 203  Q
    | |  |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22064009 tcataacacaacttattatatagcatacatatattagcacaaattcaaacaagtaaatcattgtagaggaacttactttcaacaataagaaatcaagctt 22063910  T
Q  204 tcaacataattctgacaactgtgccgccaaggtatatt 241  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  22063909 tcaacataattctgacaattgtgccaccaaggtatatt 22063872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 22070566 - 22070358
Alignment:
Q  6 gatgaaatacataattggttcaaagatttccaaatcgctaattaacaatagttgatacataatcattcaataatacaatcaaagtcattataagaaaatg 105  Q
    |||||||||||||||||||||||| ||||| ||| |     ||||||||||   ||||||||||||||||||| | |||||||||||| |||||||||||    
T  22070566 gatgaaatacataattggttcaaaaatttctaaaccc----ttaacaatagcccatacataatcattcaataaaataatcaaagtcatcataagaaaatg 22070471  T
Q  106 agcacacaacttattatatagcatacatatactagcaaaaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttc 205  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||||| |||||    
T  22070470 atcacacaacttattatatagcatacatatactagcacaaattcaaacaagtaaatagttctaaaggaacttactttcaacaataagaaatcaaactttc 22070371  T
Q  206 aacataattctga 218  Q
    |||||||| ||||    
T  22070370 aacataatcctga 22070358  T

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Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 22100953 - 22100723
Alignment:
Q  7 atgaaatacataattggttcaaagatttccaaatcgctaattaacaatagttgatacata-atcattcaataatacaatcaaagtcattataagaaaatg 105  Q
    ||||||| |||||||||||||||| |||||||| |    ||||||||||| ||||||| | || ||||||||||| |||| ||||||| |||||||||||    
T  22100953 atgaaatgcataattggttcaaag-tttccaaacc----attaacaatagctgatacaaacattattcaataatataatcgaagtcatgataagaaaatg 22100859  T
Q  106 agcacacaacttattatatagcatacatatactagcaaaaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttc 205  Q
    | ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  22100858 atcacacaacttattatatagcatacatatattagcacaaaatcaaacaagtaaatcattgtaaaggaacttactttcaacaataagaaatcaagctttc 22100759  T
Q  206 aacataattctgacaactgtgccgccaaggtatatt 241  Q
    |||||||||||||| | ||  || ||||||||||||    
T  22100758 aacataattctgaccattggaccaccaaggtatatt 22100723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 60 - 213
Target Start/End: Complemental strand, 22081273 - 22081120
Alignment:
Q  60 atacataatcattcaataatacaatcaaagtcattataagaaaatgagcacacaacttattatatagcatacatatactagcaaaaattcaaacaagtaa 159  Q
    ||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||  ||||||||| ||||| ||||||||||||||||    
T  22081273 atacataataattcaataatacaatcaaagtcatcataataaaatgatcacacaacttattatataaaatacatatattagcacaaattcaaacaagtaa 22081174  T
Q  160 atcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataat 213  Q
    ||||||||| ||||||||||||||||  |||||||||||| |||||||||||||    
T  22081173 atcgttgtaaaggaacttactttcaaacataagaaatcaaactttcaacataat 22081120  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 22064423 - 22064348
Alignment:
Q  144 aaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataattctgac 219  Q
    ||||||||||||||||||||| ||| || |||||||||||||||||| |||| ||| |||||| |||||| |||||    
T  22064423 aaattcaaacaagtaaatcgtcgtaaagaaacttactttcaacaatacgaaaccaacctttcatcataatcctgac 22064348  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 6864559 - 6864627
Alignment:
Q  144 aaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataa 212  Q
    |||||||||||||||||| | || | ||||||||||||||||||| | |||| ||||||||||||||||    
T  6864559 aaattcaaacaagtaaatagctgaaaaggaacttactttcaacaaaacgaaaccaagctttcaacataa 6864627  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 20352402 - 20352342
Alignment:
Q  155 agtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataattc 215  Q
    ||||||| ||||||||| |||||||||||||| |||||||| ||| |||||||||||||||    
T  20352402 agtaaattgttgtagagaaacttactttcaacgataagaaaccaaactttcaacataattc 20352342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 20133068 - 20133139
Alignment:
Q  144 aaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataattc 215  Q
    ||||||||| || |||||  |||||||| |||||||||||||||||| |||| ||| |||||||||||||||    
T  20133068 aaattcaaataaataaatttttgtagagaaacttactttcaacaatatgaaaccaaactttcaacataattc 20133139  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 20374260 - 20374326
Alignment:
Q  149 caaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataattc 215  Q
    ||||||||||||| ||||||||| |||||||| ||||  ||| |||| ||| |||||||||||||||    
T  20374260 caaacaagtaaattgttgtagagaaacttactatcaatgatacgaaaccaaactttcaacataattc 20374326  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 18982668 - 18982741
Alignment:
Q  141 caaaaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataatt 214  Q
    ||||||||||| ||||||||| |||| | || || ||||||||||| |   |||| ||||||||||||||||||    
T  18982668 caaaaattcaatcaagtaaatagttgaaaagaaatttactttcaactagtcgaaaccaagctttcaacataatt 18982741  T

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Target: scaffold0867 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 4279 - 4509
Alignment:
Q  7 atgaaatacataattggttcaaagatttccaaatcgctaattaacaatagttgatacata-atcattcaataatacaatcaaagtcattataagaaaatg 105  Q
    ||||||| |||||||||||||||| |||||||| |    ||||||||||| ||||||| | || ||||||||||| |||| ||||||| |||||||||||    
T  4279 atgaaatgcataattggttcaaag-tttccaaacc----attaacaatagctgatacaaacattattcaataatataatcgaagtcatgataagaaaatg 4373  T
Q  106 agcacacaacttattatatagcatacatatactagcaaaaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttc 205  Q
    | ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  4374 atcacacaacttattatatagcatacatatattagcacaaaatcaaacaagtaaatcattgtaaaggaacttactttcaacaataagaaatcaagctttc 4473  T
Q  206 aacataattctgacaactgtgccgccaaggtatatt 241  Q
    |||||||||||||| | ||  || ||||||||||||    
T  4474 aacataattctgaccattggaccaccaaggtatatt 4509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 82 - 211
Target Start/End: Original strand, 11970663 - 11970792
Alignment:
Q  82 aatcaaagtcattataagaaaatgagcacacaacttattatatagcatacatatactagcaaaaattcaaacaagtaaatcgttgtagaggaacttactt 181  Q
    |||||||  ||| |||||||||||| || ||||  ||||||||||||||||| || || || |||||||||||||||||| || |||||| |||||||||    
T  11970663 aatcaaaaccatcataagaaaatgatcatacaatatattatatagcatacatgtattatcacaaattcaaacaagtaaattgtcgtagagaaacttactt 11970762  T
Q  182 tcaacaataagaaatcaagctttcaacata 211  Q
    |||||||||  ||| |||||||||||||||    
T  11970763 tcaacaatacaaaaccaagctttcaacata 11970792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 11981426 - 11981490
Alignment:
Q  144 aaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaac 208  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||    
T  11981426 aaattcaaacaagtaaattgttgtagagaaacttactttcaacaatacgaaaccaagctttcaac 11981490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 53775168 - 53775099
Alignment:
Q  144 aaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataat 213  Q
    ||||||||||||||||||| | | ||||||||||||||||||||    || | |||||||||||||||||    
T  53775168 aaattcaaacaagtaaatcttggaagaggaacttactttcaacacgttgataccaagctttcaacataat 53775099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 3560662 - 3560730
Alignment:
Q  144 aaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataa 212  Q
    ||||||||||||||||| |   | ||||||||||||||||||||    ||||| |||||||||||||||    
T  3560662 aaattcaaacaagtaaaccaacgaagaggaacttactttcaacagattgaaattaagctttcaacataa 3560730  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 15961541 - 15961485
Alignment:
Q  152 acaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaac 208  Q
    |||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||    
T  15961541 acaagtaaatcgttgtagagaaacttactttcaacaatatgaaaccaagctttcaac 15961485  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 5436567 - 5436636
Alignment:
Q  144 aaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataat 213  Q
    |||||||||||||||| | |||| ||||||||||||||| ||| |||  ||| |||||||||||||||||    
T  5436567 aaattcaaacaagtaacttgttgaagaggaacttacttttaacgataccaaaccaagctttcaacataat 5436636  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 20712264 - 20712333
Alignment:
Q  142 aaaaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataat 213  Q
    ||||||||||||||||||||| |   |||||||||||||||||||||   |||| ||||||||| |||||||    
T  20712264 aaaaattcaaacaagtaaatcata--agaggaacttactttcaacaagttgaaaccaagctttcgacataat 20712333  T

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Target: scaffold0097 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 16103 - 16172
Alignment:
Q  142 aaaaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataat 213  Q
    ||||||||||||||||||||| |   |||||||||||||||||||||   |||| ||||||||| |||||||    
T  16103 aaaaattcaaacaagtaaatcata--agaggaacttactttcaacaagttgaaaccaagctttcgacataat 16172  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 20770976 - 20770933
Alignment:
Q  144 aaattcaaacaagtaaatcgttgtagaggaacttactttcaaca 187  Q
    ||||||||||||||||||| | | ||||||||||||||||||||    
T  20770976 aaattcaaacaagtaaatcatcgaagaggaacttactttcaaca 20770933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 18964579 - 18964622
Alignment:
Q  168 agaggaacttactttcaacaataagaaatcaagctttcaacata 211  Q
    |||||||||||||||||||||  ||| |||||||||||||||||    
T  18964579 agaggaacttactttcaacaagtagatatcaagctttcaacata 18964622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 29820938 - 29820982
Alignment:
Q  144 aaattcaaacaagtaaatcgttgtagaggaacttactttcaacaa 188  Q
    |||||| |||||||||||| ||||| || ||||||||||||||||    
T  29820938 aaattcgaacaagtaaatcattgtaaagaaacttactttcaacaa 29820982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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