View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_52 (Length: 257)
Name: NF16549_low_52
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_52 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 39996891 - 39996649
Alignment:
| Q |
15 |
aatatacttttaccagcccccaaaaaactggcttccctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgttttat |
114 |
Q |
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| T |
39996891 |
aatatacttttaccagcccccaaaaaactggcttacctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgttttat |
39996792 |
T |
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| Q |
115 |
ccacttgccggtcgtttacactcgaaaggaaatggtcgttttgatcttgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgttaacat |
214 |
Q |
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| T |
39996791 |
ccacttgccggtcgtttacactcgaaaggaaatggtcgttttgatctcgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgttaacat |
39996692 |
T |
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| Q |
215 |
tatccgaactaggtgacttttcaccttcttcagaatattaccg |
257 |
Q |
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| T |
39996691 |
tatccgaactaggtgacttttcaccttcttcggaatattaccg |
39996649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 53036708 - 53036943
Alignment:
| Q |
19 |
tacttttaccagcccccaaaaaactggcttccctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgttttatccac |
118 |
Q |
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| T |
53036708 |
tacttttaccgccccccacaaaaatggcttacctcccccaataaaatcgccaccactttgaaagactcattgagcaaagtccttgtgccgttttatccac |
53036807 |
T |
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| Q |
119 |
ttgccggtcgtttacactcgaaaggaaatggtcgttttgatcttgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgttaacattatc |
218 |
Q |
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| T |
53036808 |
tagccggtcgtttacaatggaaagaaagcggtcgttttgatgtcgaatgcaactcattgggtgctcaattcatcgaagcagaatcgtcgttaaccttatc |
53036907 |
T |
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| Q |
219 |
cgaactaggtgacttttcaccttcttcagaatatta |
254 |
Q |
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| T |
53036908 |
cgaactaggtgacttttcaccttcttgtgaatatta |
53036943 |
T |
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