View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_56 (Length: 250)
Name: NF16549_low_56
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_56 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 53881338 - 53881105
Alignment:
| Q |
17 |
ttgcagataagatgtgtgatctttgtcattgtcccttcctagcgtgttcaattgtgtttaagaagatatttccttttacatatatgtatgcataatacaa |
116 |
Q |
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| T |
53881338 |
ttgcagataagatgtgtgatctttgtcattgtcccttcctagcgtgttcaactgtgtttaagaagatatttccttttacatatatgtatgcataatacaa |
53881239 |
T |
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| Q |
117 |
gttaccatgttagtatttaacaacacaaaataccatatgtatggagatgtcaaggtgatcgcattctcttggaagcttatccgttataggatcattaccc |
216 |
Q |
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| T |
53881238 |
gttaccatgttagtatttaacaacacaaaataccatatgtagggaaatgtcaaggtgatcgcattctcttggaagcttatccgttataggatcattaccc |
53881139 |
T |
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| Q |
217 |
gtgataatctttttaaaataagggtgatcatgga |
250 |
Q |
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| T |
53881138 |
gtgataatctttttaaaataagggtgatcatgga |
53881105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 53887452 - 53887219
Alignment:
| Q |
17 |
ttgcagataagatgtgtgatctttgtcattgtcccttcctagcgtgttcaattgtgtttaagaagatatttccttttacatatatgtatgcataatacaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53887452 |
ttgcagataagatgtgtgatctttgtcattgtcccttcctagcgtgttcaactgtgtttaagaagatatttccttttacatatatgtatgcataatacaa |
53887353 |
T |
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| Q |
117 |
gttaccatgttagtatttaacaacacaaaataccatatgtatggagatgtcaaggtgatcgcattctcttggaagcttatccgttataggatcattaccc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53887352 |
gttaccatgttagtatttaacaacacaaaataccatatgtagggaaatgtcaaggtgatcgcattctcttggaagcttatccgttataggatcattaccc |
53887253 |
T |
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| Q |
217 |
gtgataatctttttaaaataagggtgatcatgga |
250 |
Q |
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| T |
53887252 |
gtgataatctttttaaaataagggtgatcatgga |
53887219 |
T |
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