View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_57 (Length: 249)
Name: NF16549_low_57
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_57 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 53880811 - 53881053
Alignment:
| Q |
7 |
aggaagcacttgacaacctacaaaagaaattaaagtgaacaatccccaacgggatgagcgactaggacaaggtcccactaccagagatagggcgacctag |
106 |
Q |
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| T |
53880811 |
aggaagcacttgacaacctacaaaagaaattaaagtgaacaatccccaacgggatgagcgactaggacaaggtcccactaccagagatagggcgacctag |
53880910 |
T |
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| Q |
107 |
aacgcctcctatacgtaataatattgggcttcaacatatgacataggtcacttctgactcataaaaggtacattgcctagcttaactacccaaagatatt |
206 |
Q |
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| T |
53880911 |
aacgcctcctatacataataatattgggctccaacatacgacataggtcacttctgactcataaaaggtacattgcctagcttaaccacccaaagatatt |
53881010 |
T |
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| Q |
207 |
atatcaaatatggagggccatgttacaagtgacaaacatatga |
249 |
Q |
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| T |
53881011 |
atatcaaatatggagggccatgttacaagtgacaaacacatga |
53881053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 53886925 - 53887167
Alignment:
| Q |
7 |
aggaagcacttgacaacctacaaaagaaattaaagtgaacaatccccaacgggatgagcgactaggacaaggtcccactaccagagatagggcgacctag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53886925 |
aggaagcacttgacaacctacaaaagaaattaaagtgaacaatccccaacgggatgagcgactaggacaaggtcccactaccagagatagggcgacctag |
53887024 |
T |
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| Q |
107 |
aacgcctcctatacgtaataatattgggcttcaacatatgacataggtcacttctgactcataaaaggtacattgcctagcttaactacccaaagatatt |
206 |
Q |
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| T |
53887025 |
aacgcctcctatacataataatattgggctccaacatacgacataggtcacttctgactcataaaaggtacattgcctagcttaaccacccaaagatatt |
53887124 |
T |
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| Q |
207 |
atatcaaatatggagggccatgttacaagtgacaaacatatga |
249 |
Q |
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| T |
53887125 |
atatcaaatatggagggccatgttacaagtgacaaacacatga |
53887167 |
T |
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