View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_61 (Length: 238)
Name: NF16549_low_61
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_61 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 34872016 - 34871812
Alignment:
| Q |
18 |
agacaatgaaaaa--catttataaatcagttgaggaaagaaacatcatagattgcaacacttaactattgttttcattttgcaggaaatgatgaaaagca |
115 |
Q |
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| T |
34872016 |
agacaatgaaaaatgcatttataaatcagttgaggaaagaaacatcatggattgcaagacttaactgttgttttcattttgcaggaaatgatgaaaagca |
34871917 |
T |
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| Q |
116 |
accatcgcagcaaactcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatagacttaacggtaacggttgatgagaaaagaggat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34871916 |
accatcgcagcaaactcttgagatgccttaagggtgcttgctggttttggtgaagtgaaggaaatagacttaacggtaacggttgatgaaaaaagaggat |
34871817 |
T |
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| Q |
216 |
tgtgc |
220 |
Q |
| |
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||||| |
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| T |
34871816 |
tgtgc |
34871812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 34873608 - 34873812
Alignment:
| Q |
18 |
agacaatgaaaaa--catttataaatcagttgaggaaagaaacatcatagattgcaacacttaactattgttttcattttgcaggaaatgatgaaaagca |
115 |
Q |
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|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
34873608 |
agacaatgaaaaatgcatttatatatcagttgaggaaagaaacatcatagattgcaagacttaactggtgttttcattttgcaggaaatgatgaaaagca |
34873707 |
T |
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| Q |
116 |
accatcgcagcaaactcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatagacttaacggtaacggttgatgagaaaagaggat |
215 |
Q |
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| T |
34873708 |
accatcgcaacaaactcttgagatgccttaagggtgcttgcaggttctggtgaagtgaaggaaatggacttaacggtaacggttgatgagaaaagaggat |
34873807 |
T |
|
| Q |
216 |
tgtgc |
220 |
Q |
| |
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||||| |
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| T |
34873808 |
tgtgc |
34873812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 9911247 - 9911129
Alignment:
| Q |
101 |
aaatgatgaaaagcaaccatcgcagcaaactcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatagacttaacggtaacggttg |
200 |
Q |
| |
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|||||||||||||||||||| |||||| | |||||||| ||||| ||||| |||| |||| || |||| ||||||||| || ||||| |||||||||| |
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| T |
9911247 |
aaatgatgaaaagcaaccatggcagcagaatcttgagacagcttaatggtgcgtgctggttcaggagaagagaaggaaatggagttaacagtaacggttg |
9911148 |
T |
|
| Q |
201 |
atgagaaaagaggattgtg |
219 |
Q |
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||||||| ||| |||||| |
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| T |
9911147 |
ttgagaaacgagaattgtg |
9911129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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