View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_62 (Length: 238)
Name: NF16549_low_62
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2388433 - 2388214
Alignment:
| Q |
1 |
tgtatccggttagaagctttggaaagcttacaagttattttcctgcataattttgcaggtttctttttcaggggatagttgtattagtagttatggttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
2388433 |
tgtatccggttagaagctttggaaagcttacaagttattttcctgcataattttgcaggtttctttttaagcggatagttgtattagtagttatggttgt |
2388334 |
T |
|
| Q |
101 |
tattttatcggtggttttgactatatgggaaggagatgagtttacttttgatgaatttggagcgacgactgtgtttttgttttcgagtgctgatgcattt |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2388333 |
tattttatcggtggttttgactacatgggaaggagatgagtttagttttgatgaatttggagcgacaactgtgtttttgttttcgagtgctgatgcattt |
2388234 |
T |
|
| Q |
201 |
agcggttttctgtttcagttc |
221 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
2388233 |
agc-gttttctgtttcagttc |
2388214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 32 - 212
Target Start/End: Original strand, 24762198 - 24762390
Alignment:
| Q |
32 |
aagttattttcctgcataattttgcaggtttctttttcaggggatagttgtattagtagttatggttgttattttatcggtggt-----------tttga |
120 |
Q |
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| T |
24762198 |
aagttatttttctgcataattttgcaggttgctctttagggggatagttgtattagtagctatggtggttattttatcggtggtcgtcggaccagtttga |
24762297 |
T |
|
| Q |
121 |
ctatatgggaaggagatgagtttacttttgatgaatttggagcgacgactgtg-tttttgttttcgagtgctgatgcatttagcggttttctg |
212 |
Q |
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| T |
24762298 |
ctatatgggaaggagatgagtttagttttgaggaatttggagcggcgactgtgttttttgttttcgagtgctgatgcatttagcgcttttctg |
24762390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 32 - 212
Target Start/End: Original strand, 52129633 - 52129825
Alignment:
| Q |
32 |
aagttattttcctgcataattttgcaggtttctttttcaggggatagttgtattagtagttatggttgttattttatcggtggt-----------tttga |
120 |
Q |
| |
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|||||||||| ||||||||||||||||||| || ||| |||||||||||||||||||| |||||| ||||||||||||||||| ||||| |
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| T |
52129633 |
aagttatttttctgcataattttgcaggttgctctttagggggatagttgtattagtagctatggtggttattttatcggtggtcgtcggaccagtttga |
52129732 |
T |
|
| Q |
121 |
ctatatgggaaggagatgagtttacttttgatgaatttggagcgacgactgtg-tttttgttttcgagtgctgatgcatttagcggttttctg |
212 |
Q |
| |
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|||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
52129733 |
ctatatgggaaggagatgagtttagttttgaggaatttggagcggcgactgtgttttttgttttcgagtgctgatgcatttagcgcttttctg |
52129825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 32649991 - 32649761
Alignment:
| Q |
1 |
tgtatccggttagaagctttggaaagcttacaagttattttcctgcataattttgcaggtttctttttcaggggatagttgtattagtagttatggttgt |
100 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||| || ||| | ||||||||||||||||||| ||||| ||| |
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| T |
32649991 |
tgtatccgattagaagcgatggaaaacttacaagttattttcctggataattttgcaggttgctctttaaagggatagttgtattagtagatatggatgt |
32649892 |
T |
|
| Q |
101 |
tattttatcggtggt-----------tttgactatatgggaaggagatgagtttacttttgatgaatttggagcgacgactgtgtttttgttttcgagtg |
189 |
Q |
| |
|
|||||||||| |||| ||||||||||||| ||||||||||||||| |||||| |||||| ||||| ||||| ||| |||||||| ||||| |
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| T |
32649891 |
tattttatcgttggttgttggaccagtttgactatatggaaaggagatgagtttagttttgaggaatttcgagcggcgactttgtatttgtttttgagtg |
32649792 |
T |
|
| Q |
190 |
ctgatgcatttagcggttttctgtttcagtt |
220 |
Q |
| |
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|||||||||||||| ||||| ||||||||| |
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| T |
32649791 |
ttgatgcatttagcgcttttccgtttcagtt |
32649761 |
T |
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