View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_63 (Length: 237)
Name: NF16549_low_63
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40212984 - 40212763
Alignment:
| Q |
1 |
aaatttataaatagtagtttcgttttgacttttgagcataattcaaatactagnnnnnnnnnncctgagtggagcatcataattcgaagactattcttaa |
100 |
Q |
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| T |
40212984 |
aaatttataaatagtagttttgttttgacttttgagcataattcaaatactagttttttttttcctgagtggagcatcataattcgaagactattcttaa |
40212885 |
T |
|
| Q |
101 |
tggaaaaaagttatgcaatttcactaataatcaaagcaatacaattggtggcttcttctcttcatcacaattttaaagaatggccatatatgtgtccatc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40212884 |
tggaaaaaagttatgcaatttcactaataatcaaagcaatacaattggtggcttcatctcttcatcacaattttaaagaatggccatacatgtgtccatc |
40212785 |
T |
|
| Q |
201 |
tactaagttaggagcaacaatt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
40212784 |
tactaagttaggagcaacaatt |
40212763 |
T |
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