View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_64 (Length: 235)
Name: NF16549_low_64
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35886535 - 35886757
Alignment:
| Q |
1 |
aaaatataaacattttctcttcaattaacttttaaccaaaatcaattttacggtatcaatttttatcataagagaatcaaacacaaactaagattttatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35886535 |
aaaatataaacattttctcttcaattaacttttaaccaaaatcaattttacggtatcaatttttatcacaagagaatcaaacacaaactaagattttatg |
35886634 |
T |
|
| Q |
101 |
cttggaaaagatacaacaatacttgtaaatatctttgaacaaggagtgactttac-gttcaataacttgatgattttagtgtatttaaaagataaataaa |
199 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35886635 |
cttggaaaagatacaacaatacttgtaaatatctttgaacaaggagtgactttactattcaataacttgatgattttagtgtatttaaaagataaataaa |
35886734 |
T |
|
| Q |
200 |
ttatttaaatgaatgaaaatgat |
222 |
Q |
| |
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||||||| ||||| ||||||||| |
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|
| T |
35886735 |
ttatttagatgaaagaaaatgat |
35886757 |
T |
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