View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_65 (Length: 233)
Name: NF16549_low_65
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 53278663 - 53278871
Alignment:
| Q |
1 |
tatatgatgagggggttcaaccgaactcattgaacttaaaaaatatattttatattttgaaccctctgatannnnnnnacatcaatagcccaaaaggctc |
100 |
Q |
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| T |
53278663 |
tatatgatgagggggttcaaccgaactcattgaacttaaaaaatatattttatattttgaaccctttgatatttttttacatcaatagctcaaaaggctc |
53278762 |
T |
|
| Q |
101 |
tataaatgaaaatattgaacttctgggttataggattctagataatataacttaaactcctaatccaatgacaatttctttaaaactattattcactaac |
200 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
53278763 |
tacaa-tgaaaatattgaacttctgggttataggattctagataatataacttaaactcttaatccaatgacaatttctataaaactattattcactaac |
53278861 |
T |
|
| Q |
201 |
gttattgagt |
210 |
Q |
| |
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|||||||||| |
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| T |
53278862 |
gttattgagt |
53278871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11835988 - 11835761
Alignment:
| Q |
1 |
tatatgatgagggggttcaaccgaactcattgaacttaaaaaatatattttatattttgaaccctctgatannnnnnnacatcaatagcccaaaaggctc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
11835988 |
tatatgatgagggg-ttcaaccgaactgattgaacttaaaaaatatattttatattttgaaccctttgatatttttttacatcaatagcccaaaaggctc |
11835890 |
T |
|
| Q |
101 |
tataaatgaaaatattgaacttctgggttataggattctaga--------taatataacttaaactcctaatccaatgacaatttctttaaaactattat |
192 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
11835889 |
tacaaatgaaaatattgaacttctgggttataggattctagatcctccactaatataacttaaactcttaatccaatgacaatttctataaaactattat |
11835790 |
T |
|
| Q |
193 |
tcactaacgttattgagtagtgttgaaaa |
221 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
11835789 |
tcactaacgttattgagtagtgttgaaaa |
11835761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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