View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16549_low_68 (Length: 231)
Name: NF16549_low_68
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_68 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 14160175 - 14160393
Alignment:
| Q |
1 |
atacttgtatgtatatttgtgttgtggctcaaagaatnnnnnnn-ttcaatactaagaagaatgaaaaattggttctactattggttgtgcaagtgcaag |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14160175 |
atacttgtatgtatatttgtgttgtggctcaaagaataaaaaaaattcaatactaagaagaatgaaaaattggttctactattggttgtgcaagtgcaag |
14160274 |
T |
|
| Q |
100 |
tgtttgtttcggagtagcagaggattgtttggttgatatcatcatcaacttggtgctacctaggcctatctatgcccatatgggccaagttgtctcatac |
199 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14160275 |
tgtttgtttcagagtagcagaggattgtttggttgatttcatcatcaacttggtgctacctaggcctatctatgcccatatgggccaagttgtctcatac |
14160374 |
T |
|
| Q |
200 |
tttgatcacaaagaataat |
218 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14160375 |
tttgatcacaaagaataat |
14160393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University