View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16549_low_69 (Length: 217)

Name: NF16549_low_69
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16549_low_69
NF16549_low_69
[»] chr1 (3 HSPs)
chr1 (18-206)||(42844103-42844303)
chr1 (117-168)||(46097929-46097980)
chr1 (42-87)||(46098047-46098092)
[»] chr4 (1 HSPs)
chr4 (18-206)||(5929409-5929609)
[»] chr7 (1 HSPs)
chr7 (20-206)||(9124027-9124225)
[»] chr8 (2 HSPs)
chr8 (117-206)||(2600834-2600923)
chr8 (18-83)||(2600994-2601059)
[»] chr6 (1 HSPs)
chr6 (36-87)||(20368935-20368986)


Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 42844103 - 42844303
Alignment:
Q  18 agtatgttctaacaacactccaatttcaccactcttatcaaccatttcatcccaaacagtaaactctcat------------tcccaaatcttgattttg 105  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||            ||| ||||||||||||||    
T  42844103 agtatgttctaacaacactccaacttcaccactcttatcaaccatttcatcccaaacagtaaactctcataacatatctcattccaaaatcttgattttg 42844202  T
Q  106 cagtaaccagtaataattggttgattttaaagttgggcaattgaaaactctattttacattcaagatttcatcatagaaattcatcaatctcttcttctc 205  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42844203 cagtaaacagcaataattggttgattttaaagttgggcaattgaaaactctattttacattcatgatttcatcatagaaattcatcaatctcttcttctc 42844302  T
Q  206 a 206  Q
    |    
T  42844303 a 42844303  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 46097980 - 46097929
Alignment:
Q  117 aataattggttgattttaaagttgggcaattgaaaactctattttacattca 168  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46097980 aataattggttgattttaaagttgggcaactgaaaactctattttacattca 46097929  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 46098092 - 46098047
Alignment:
Q  42 ttcaccactcttatcaaccatttcatcccaaacagtaaactctcat 87  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  46098092 ttcatcactcttatcaaccatttcatcccaaacagtaaactctcat 46098047  T

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Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 5929409 - 5929609
Alignment:
Q  18 agtatgttctaacaacactccaatttcaccactcttatcaaccatttcatcccaaacagtaaactctcat------------tcccaaatcttgattttg 105  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||            ||| ||||||||||||||    
T  5929409 agtatgttctaacaacactccaacttcaccactcttatcaaccatttcatcccaaacagtaaactctcataacacatctcattccaaaatcttgattttg 5929508  T
Q  106 cagtaaccagtaataattggttgattttaaagttgggcaattgaaaactctattttacattcaagatttcatcatagaaattcatcaatctcttcttctc 205  Q
    |||||| ||  ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  5929509 cagtaaacatcaataattggttgattttaaagttgggcaattgaaaactctatttttcattcatgatttcatcatagaaattcatcaatctcttcttctc 5929608  T
Q  206 a 206  Q
    |    
T  5929609 a 5929609  T

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Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 9124225 - 9124027
Alignment:
Q  20 tatgttctaacaacactccaatttcaccactcttatcaaccatttcatcccaaacagtaaactctcat------------tcccaaatcttgattttgca 107  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||            ||| ||||||||||||||||    
T  9124225 tatgttctaacaacagtccaacttcaccactcttatcaaccatttcatcccaaacagtaaacgctcataacacatcccattccaaaatcttgattttgca 9124126  T
Q  108 gtaaccagtaataattggttgattttaaagttgggcaattgaaaactctattttacattcaagatttcatcatagaaattcatcaatctcttcttctca 206  Q
    |||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9124125 gtaaacaacaataattggttgattttaaagttgggcaattgaaaactctattttacattcatgatttcatcatagaaattcatcaatctcttcttctca 9124027  T

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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 2600923 - 2600834
Alignment:
Q  117 aataattggttgattttaaagttgggcaattgaaaactctattttacattcaagatttcatcatagaaattcatcaatctcttcttctca 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||    
T  2600923 aataattggttgattttaaagttgggcaattgaaaactctattttacattcatgatttcatcatggaaattcatcaatctctttttctca 2600834  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 2601059 - 2600994
Alignment:
Q  18 agtatgttctaacaacactccaatttcaccactcttatcaaccatttcatcccaaacagtaaactc 83  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  2601059 agtatgttttaacaacactccaacttcaccactcttatcatccatttcatcccaaacaataaactc 2600994  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 20368986 - 20368935
Alignment:
Q  36 tccaatttcaccactcttatcaaccatttcatcccaaacagtaaactctcat 87  Q
    ||||| ||||||||||| |||||||| |||||||||||||| ||||||||||    
T  20368986 tccaacttcaccactctaatcaaccacttcatcccaaacagcaaactctcat 20368935  T

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