View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_7 (Length: 705)
Name: NF16549_low_7
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_7 |
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| [»] scaffold0305 (1 HSPs) |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 603; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 21 - 695
Target Start/End: Complemental strand, 24950316 - 24949642
Alignment:
| Q |
21 |
atagggaaggtaagaattaggttatctactctcgaaactgatagagtttatacacattcataccctcttttagtactaaatccatcaggtgtgaagaaaa |
120 |
Q |
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|||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||| ||||||| ||||| |||||||||| |
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| T |
24950316 |
atagggaaggtaagaattcggttatctactcttgaaaccgatagagtttacacacattcatatcctcttttagtattaaatccgtcaggagtgaagaaaa |
24950217 |
T |
|
| Q |
121 |
caggagaagttcaattggctgtccggttcacaaactcgtcttacttcaacatgttgtatatgtattccatgccgctgctgccgaagatgcactacattca |
220 |
Q |
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||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24950216 |
caggagaagttcaattggctgtcaggttcacaaattcttcttacttcaacatgttgtatatgtattccatgccgctgttgccgaagatgcactacattca |
24950117 |
T |
|
| Q |
221 |
tcccttatcggtgattcagctcgaccatctaaggcatcaagcgacacaaattgtgtcgatgaggctgagccgagctgagccaccgctaaggaaagaagta |
320 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24950116 |
tcccttatcggtgattcagctcgaccatctgaggcatcaagcgacacaaattgtgtcgatgaggctgagccgagctgagccaccgctaaggaaagaagta |
24950017 |
T |
|
| Q |
321 |
gtagaatacatgcttgatgtggattcacatatgtggagtatgagaagaagcaaagccaatttcttcaggataatgaaagttttatcgagtttgatcgcat |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24950016 |
gtagaatacatgcttgatgtggattcacatatgtggagtatgagaagaagcaaagccaatttcttcaggataatgaaagttttatcgagtttgatcgcat |
24949917 |
T |
|
| Q |
421 |
ttggaaaatggtttgatcaaatttgcaattggaaaaacccgatcacatcgatactaattcatatcctattcataatattagttctttaccctgacctaat |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24949916 |
ttggaaaatggtttgatcaaatttgcaattggaaaaacccgatcacatcgatactaattcatatcctattcataatattagttctttaccctgaactaat |
24949817 |
T |
|
| Q |
521 |
acttccaacaattttcctatacatgttcatgattggaatatggaactttagatggaggccaagacaccctccacatatggacactagactatctcatgct |
620 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24949816 |
acttccaacaattttcctatacatgttcatgattggaatatggaactttagatggaggccaagacaccctccacatatggacactagactatctcatgcc |
24949717 |
T |
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| Q |
621 |
gacgcagcttttcccgatgaactagacgaagagttcgacacattccctacatcgcgttcctcagatattcttcga |
695 |
Q |
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| T |
24949716 |
gacgcagcttttccgaatgaactagacgaagagttcgacacattccctacatcgcgttcctcagatattgttcga |
24949642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 11577076 - 11577024
Alignment:
| Q |
330 |
atgcttgatgtggattcacatatgtggagtatgagaagaagcaaagccaattt |
382 |
Q |
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| T |
11577076 |
atgcttgatgtggattaccatatgtggagtctaaggagaagcaaagccaattt |
11577024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 11577379 - 11577315
Alignment:
| Q |
27 |
aaggtaagaattaggttatctactctcgaaactgatagagtttatacacattcataccctctttt |
91 |
Q |
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||||| ||||| |||||||| ||||| |||||||||||||||||||| |||| || |||||||| |
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| T |
11577379 |
aaggtgagaataaggttatcaactcttgaaactgatagagtttatactcattactatcctctttt |
11577315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 51 - 604
Target Start/End: Complemental strand, 36810496 - 36809943
Alignment:
| Q |
51 |
ctcgaaactgatagagtttatacacattcataccctcttttagtactaaatccatcaggtgtgaagaaaacaggagaagttcaattggctgtccggttca |
150 |
Q |
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||||| |||||| |||| || |||||||| || || ||| |||| || ||||| | || |||||||||| |||||| ||||| ||||||| |||| | |
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| T |
36810496 |
ctcgagactgatcgagtctacacacattcctatccacttctagttcttcatccaactggggtgaagaaaatgggagaaattcaactggctgtaaggttta |
36810397 |
T |
|
| Q |
151 |
caaactcgtcttacttcaacatgttgtatatgtattccatgccgctgctgccgaagatgcactacattcatcccttatcggtgattcagctcgaccatct |
250 |
Q |
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| ||| |||| |||||||| || | |||||||| | || ||||||| |||||||| |||||||| || ||| | || | ||||||||| ||| |
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| T |
36810396 |
cttgctcttctttgctcaacatgatgcacatgtattcaaatccattgctgcccaagatgcattacattcacccattaaccgtcagccagctcgacagtct |
36810297 |
T |
|
| Q |
251 |
aaggcatcaagcgacacaaattgtgtcgatgaggctgagccgagctgagccaccgctaaggaaagaagtagtagaatacatgcttgatgtggattcacat |
350 |
Q |
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||||||||||| || || ||||| || ||||| || ||||| |||||||| || || || || || ||||| ||||| ||||| ||||| | ||| || |
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| T |
36810296 |
gaggcatcaagctactcagattgtttccatgagacttagccgtgctgagccgccactgagaaaggaggtagtggaatatatgctagatgtcggttcccac |
36810197 |
T |
|
| Q |
351 |
atgtggagtatgagaagaagcaaagccaatttcttcaggataatgaaagttttatcgagtttgatcgcatttggaaaatggtttgatcaaatttgcaatt |
450 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| || ||| ||||| | || || || ||||||| |||||||| ||||| ||||||| |
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| T |
36810196 |
atgtggagtatgagaagaagcaaagccaattttttcagaatcatgggggttttgagtggattaattgctgttggaaagtggtttgaccaaatctgcaatt |
36810097 |
T |
|
| Q |
451 |
ggaaaaacccgatcacatcgatactaattcatatcctattcataatattagttctttaccctgacctaatacttccaacaattttcctatacatgttcat |
550 |
Q |
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|||||||||| |||||| | | |||||||||||| |||| |||||| | || | |||||||| || || | |||||||||||||| ||| | || | |
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| T |
36810096 |
ggaaaaaccctatcacaacagttctaattcatatcttatttataatacttgtcatgtaccctgaacttatcttaccaacaattttcctttacctcttttt |
36809997 |
T |
|
| Q |
551 |
gattggaatatggaactttagatggaggccaagacaccctccacatatggacac |
604 |
Q |
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||||||| | ||| ||| ||||||||||||||| ||||| || || |||||||| |
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| T |
36809996 |
gattggagtttggtactatagatggaggccaaggcacccacctcacatggacac |
36809943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 252 - 676
Target Start/End: Complemental strand, 13360 - 12936
Alignment:
| Q |
252 |
aggcatcaagcgacacaaattgtgtcgatgaggctgagccgagctgagccaccgctaaggaaagaagtagtagaatacatgcttgatgtggattcacata |
351 |
Q |
| |
|
||||||||||| || || || || || |||||| |||| || |||||||| ||||| || || || ||||| || || ||||||||||| | ||| || | |
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| T |
13360 |
aggcatcaagctactcagatagtttcaatgaggttgagtcgcgctgagccgccgctgagaaaggaggtagttgagtatatgcttgatgttggttcccaca |
13261 |
T |
|
| Q |
352 |
tgtggagtatgagaagaagcaaagccaatttcttcaggataatgaaagttttatcgagtttgatcgcatttggaaaatggtttgatcaaatttgcaattg |
451 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||| || ||| ||| || | | || || ||||||||||| ||||||||||||||||| |
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| T |
13260 |
tgtggagtatgagaagaagcaaggctaatttcttcagaatcatgggagtattgagtggactaattgctgcgggaaaatggttcgatcaaatttgcaattg |
13161 |
T |
|
| Q |
452 |
gaaaaacccgatcacatcgatactaattcatatcctattcataatattagttctttaccctgacctaatacttccaacaattttcctatacatgttcatg |
551 |
Q |
| |
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|||||| || || ||| || | || ||||||||| | || |||||||| || | || ||||| || || | |||||| ||||||| ||| | ||| || |
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| T |
13160 |
gaaaaatccaattacaacggttctgattcatatcttgtttataatattggtcatgtatcctgaacttatcttaccaacagttttcctttacctcttcctg |
13061 |
T |
|
| Q |
552 |
attggaatatggaactttagatggaggccaagacaccctccacatatggacactagactatctcatgctgacgcagcttttcccgatgaactagacgaag |
651 |
Q |
| |
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|||||||| ||| ||| |||||||||||||||||||||||| | ||||||||| | || ||||| || || ||||| ||| |||||||| || |||| |
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| T |
13060 |
attggaatttggcactatagatggaggccaagacaccctcctaacatggacactcggctctctcacgccgattcagctcatccggatgaacttgatgaag |
12961 |
T |
|
| Q |
652 |
agttcgacacattccctacatcgcg |
676 |
Q |
| |
|
|||||||||||||||| || ||||| |
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| T |
12960 |
agttcgacacattcccgacttcgcg |
12936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 300 - 388
Target Start/End: Complemental strand, 3262 - 3174
Alignment:
| Q |
300 |
ccaccgctaaggaaagaagtagtagaatacatgcttgatgtggattcacatatgtggagtatgagaagaagcaaagccaatttcttcag |
388 |
Q |
| |
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||||| || |||||||||||||| || |||||||||||||||||||||||||| |||||| | |||||||||||||| ||||| ||||| |
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| T |
3262 |
ccacctcttaggaaagaagtagttgagtacatgcttgatgtggattcacatatatggagtttaagaagaagcaaagcaaattttttcag |
3174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 309 - 385
Target Start/End: Complemental strand, 8415893 - 8415817
Alignment:
| Q |
309 |
aggaaagaagtagtagaatacatgcttgatgtggattcacatatgtggagtatgagaagaagcaaagccaatttctt |
385 |
Q |
| |
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|||||||| | ||| || |||||| | ||||| ||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
8415893 |
aggaaagaggcagttgagtacatgttagatgttgattcacatatgtggagcatgagaagaagcaaagccaacttctt |
8415817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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