View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_low_70 (Length: 214)
Name: NF16549_low_70
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 6833460 - 6833644
Alignment:
| Q |
16 |
atgaaggtcatgcatgttccatagttcagtggatagtgatgagaggtctgtgtgtgtgcttgaatgtcatatctttcttccttgtcctcatcaacaattg |
115 |
Q |
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| T |
6833460 |
atgaaggtcatgcatgttccatagttcagtggatagtgatgagaggtctgtgtgtgtgcttgaatgtcatatctttcttccttgtcctcatcaacaattg |
6833559 |
T |
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| Q |
116 |
aacctgacattggcacaaacaccttttatcacttatcagtattacaaagaaaatgtttaggcataaattaagtcacttgttattg |
200 |
Q |
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| T |
6833560 |
aacctgacattggcacaaacaccttttatcacttatcagtattacaaagaaaatgtttaggcataaattaagtcacttgttattg |
6833644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 6818903 - 6819018
Alignment:
| Q |
18 |
gaaggtcatgcatgttccatagttcagtggatagtgatgagaggtctgtgtgtgtgcttg---aat---gtcatatctttcttccttgtcctcatcaaca |
111 |
Q |
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| T |
6818903 |
gaaggtcatgcatgttccatagttcaatggatagtgacgagaagtctgagtgtatgcttcgttaatatggtcatatctttcttccttgtcctcatcaact |
6819002 |
T |
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| Q |
112 |
attgaacctgacattg |
127 |
Q |
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| T |
6819003 |
attgaacctgacattg |
6819018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 6810705 - 6810817
Alignment:
| Q |
18 |
gaaggtcatgcatgttccatagttcagtggatagtgatgagaggtctgtgtgtgtgct---tgaat---gtcatatctttcttccttgtcctcatcaaca |
111 |
Q |
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| T |
6810705 |
gaaggtcatgcatgttccatagttcaatggatagtgacgagaagtctgagtgtatgcttcgttaatatggtcatatctttcttccttgtcgtcatcaaca |
6810804 |
T |
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| Q |
112 |
attgaacctgaca |
124 |
Q |
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| T |
6810805 |
aacgaacctgaca |
6810817 |
T |
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