View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16549_low_8 (Length: 698)

Name: NF16549_low_8
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16549_low_8
NF16549_low_8
[»] chr8 (4 HSPs)
chr8 (213-588)||(39852898-39853249)
chr8 (18-212)||(39853279-39853473)
chr8 (596-681)||(39852060-39852145)
chr8 (645-682)||(39851937-39851974)
[»] chr6 (1 HSPs)
chr6 (95-185)||(32447882-32447972)
[»] scaffold0002 (1 HSPs)
scaffold0002 (19-161)||(465501-465643)
[»] chr3 (2 HSPs)
chr3 (19-161)||(52054910-52055052)
chr3 (19-161)||(53574520-53574662)
[»] chr2 (2 HSPs)
chr2 (19-161)||(30199665-30199807)
chr2 (57-184)||(26028045-26028172)
[»] chr1 (2 HSPs)
chr1 (19-161)||(31354815-31354957)
chr1 (19-158)||(16992102-16992241)
[»] chr7 (1 HSPs)
chr7 (23-146)||(6639568-6639691)
[»] chr5 (1 HSPs)
chr5 (19-161)||(35897277-35897419)
[»] chr4 (1 HSPs)
chr4 (20-161)||(20275375-20275516)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 213 - 588
Target Start/End: Complemental strand, 39853249 - 39852898
Alignment:
Q  213 ttgttgctcctgttgtaagtttgagagtttcggtatacttcgttgtttattcatatggatattaaatcaatgcccaagtactatatcttgaagaggtggg 312  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||     
T  39853249 ttgttgctcctgtcgtaagtttgagagtttcggtatacttcgttgtttattc---------ttaaatcaatgcccaagtactatatcttgaagaggtgga 39853159  T
Q  313 caaagatagcaaaaaat-aggatttgcctacaactgttgttagtgatgtccctgatttatcaagatagtcactgaagcatgcaccaccattctaatttca 411  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39853158 caaagatagcaaaaaaacaggatttgcctacaactgttgttagtgatgtccctgctttatcaagatagtcactgaagcatgcaccaccattctaatttca 39853059  T
Q  412 ccagcaacagcttcccatctttccctctcctttctttccaacattttattttttatcggatcctaggtttgttggttgnnnnnnnnntataaaatcactt 511  Q
    ||||||||| ||||||||||               ||||||||||||||||||||||||||||||||||||||| |||          | ||||||||||    
T  39853058 ccagcaacaacttcccatct---------------ttccaacattttattttttatcggatcctaggtttgttgattgaaaaaaaaa-aaaaaatcactt 39852975  T
Q  512 attatttttcgtaaccgctagagtgaaaggaaaattcaaaattgtgcaaacgatggcttttgttgaaataaccttat 588  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39852974 attatttttggtaaccgctagagtgaaaggaaaattcaaaattgtgcaaacgatggtttttgttgaaataaccttat 39852898  T

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Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 39853473 - 39853279
Alignment:
Q  18 atccaagactcaagaactcatatcctcatatcttccaagaaatgtctgagatttatactcccattatctttgatctattccaacatgagtatcagttgtt 117  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39853473 atccaagactcaagaactcatatcctcatatctttcaacaaatgtctgagatttatactcccattatctttgatctattccaacatgagtatcagttgtt 39853374  T
Q  118 tgaaatctgttttgtgaagagcatgaacatacaaacatcatcatttgattttgttatttccatggcaagggatcgaggagagtggaaactggcaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39853373 tgaaatctgttttgtgaagagcatgaacatacaaacatcatcatttgattttgttatttccatggcaagggatcgaggagagtggaaactggcaa 39853279  T

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Target: chr8; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 596 - 681
Target Start/End: Complemental strand, 39852145 - 39852060
Alignment:
Q  596 gaggtattgcccttgtatatgttatgataaacaattgtataaaagaggtatttcccttgtacaaatgatacacgtttcattcaaat 681  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  39852145 gaggtattgcccttgtatatgttatgataaacaattgtacaaaagaggtatttctcttgtacaaatgatacacgtttcattcaaat 39852060  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 645 - 682
Target Start/End: Complemental strand, 39851974 - 39851937
Alignment:
Q  645 atttcccttgtacaaatgatacacgtttcattcaaatc 682  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  39851974 atttcccttgtacaaattatacacgtttcattcaaatc 39851937  T

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Target: chr6 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 32447972 - 32447882
Alignment:
Q  95 ttccaacatgagtatcagttgtttgaaatctgttttgtgaagagcatgaacatacaaacatcatcatttgattttgttatttccatggcaa 185  Q
    |||||| | |||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  32447972 ttccaataggagtatcagttgtttgaaatgtgttttgtgaagagcttgaacatacaaacatcaccatttgattttgttatttccatggcaa 32447882  T

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Target: scaffold0002 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 465643 - 465501
Alignment:
Q  19 tccaagactcaagaactcatatcctcatatcttccaagaaatgtctgagatttatactcccattatctttgatctattccaacatgagtatcagttgttt 118  Q
    ||||||||| |||||||||||| || |||| || ||| || ||||  || |||||||||| | ||| || ||  ||||||||| ||||||| ||||||||    
T  465643 tccaagactgaagaactcatattctgatattttgcaacaagtgtccaagctttatactcctactattttcgacttattccaacgtgagtatgagttgttt 465544  T
Q  119 gaaatctgttttgtgaagagcatgaacatacaaacatcatcat 161  Q
    |||   || |||||||| |||||| ||||||||||||||||||    
T  465543 gaagcatgctttgtgaaaagcatggacatacaaacatcatcat 465501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 52055052 - 52054910
Alignment:
Q  19 tccaagactcaagaactcatatcctcatatcttccaagaaatgtctgagatttatactcccattatctttgatctattccaacatgagtatcagttgttt 118  Q
    ||||||||| |||||||||||| || |||| || ||| || ||||  || |||||||||| | ||| || ||  ||||||||| ||||||| ||||||||    
T  52055052 tccaagactgaagaactcatattctgatattttgcaacaagtgtccaagctttatactcctactattttcgacttattccaacgtgagtatgagttgttt 52054953  T
Q  119 gaaatctgttttgtgaagagcatgaacatacaaacatcatcat 161  Q
    |||   || |||||||| |||||| ||||||||||||||||||    
T  52054952 gaagcatgctttgtgaaaagcatggacatacaaacatcatcat 52054910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 53574662 - 53574520
Alignment:
Q  19 tccaagactcaagaactcatatcctcatatcttccaagaaatgtctgagatttatactcccattatctttgatctattccaacatgagtatcagttgttt 118  Q
    ||||||||| |||||||||||| || |||| || ||| || ||||  || |||||||||| | ||| || ||  ||||||||| ||||||| ||||||||    
T  53574662 tccaagactgaagaactcatattctgatattttgcaacaagtgtccaagctttatactcctactattttcgacttattccaacgtgagtatgagttgttt 53574563  T
Q  119 gaaatctgttttgtgaagagcatgaacatacaaacatcatcat 161  Q
    |||   || |||||||| |||||| ||||||||||||||||||    
T  53574562 gaagcatgctttgtgaaaagcatggacatacaaacatcatcat 53574520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 30199807 - 30199665
Alignment:
Q  19 tccaagactcaagaactcatatcctcatatcttccaagaaatgtctgagatttatactcccattatctttgatctattccaacatgagtatcagttgttt 118  Q
    ||||||||| |||||||||||| || |||| || ||| || ||||  || |||||||||| | ||| || ||  ||||||||| ||||||| ||||||||    
T  30199807 tccaagactgaagaactcatattctgatattttgcaacaagtgtccaagctttatactcctactattttcgacttattccaacgtgagtatgagttgttt 30199708  T
Q  119 gaaatctgttttgtgaagagcatgaacatacaaacatcatcat 161  Q
    |||   || |||||||| |||||| ||||||||||||||||||    
T  30199707 gaagcatgctttgtgaaaagcatggacatacaaacatcatcat 30199665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 184
Target Start/End: Complemental strand, 26028172 - 26028045
Alignment:
Q  57 aaatgtctgagatttatactcccattatctttgatctattccaacatgagtatcagttgtttgaaatctgttttgtgaagagcatgaacatacaaacatc 156  Q
    ||||||| ||| | ||||||||   ||| ||||||||||||||| |||||| | ||||||||| |   |||| | ||||||| || |||||||||||| |    
T  26028172 aaatgtcagagttgtatactcctgctatttttgatctattccaagatgagtttgagttgtttgcagcatgttctatgaagagtatcaacatacaaacaac 26028073  T
Q  157 atcatttgattttgttatttccatggca 184  Q
    |||| |||||| ||||||| ||||||||    
T  26028072 atcaattgattatgttattaccatggca 26028045  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 31354815 - 31354957
Alignment:
Q  19 tccaagactcaagaactcatatcctcatatcttccaagaaatgtctgagatttatactcccattatctttgatctattccaacatgagtatcagttgttt 118  Q
    ||||||||| |||||||||||| || |||| || ||| || ||||  || |||||||||| | ||| || ||  ||||||||| ||||||| ||||||||    
T  31354815 tccaagactgaagaactcatattctgatattttgcaacaagtgtccaagctttatactcctactattttcgacttattccaacgtgagtatgagttgttt 31354914  T
Q  119 gaaatctgttttgtgaagagcatgaacatacaaacatcatcat 161  Q
    |||   || |||||||| |||||| ||||||||||||||||||    
T  31354915 gaagcatgctttgtgaaaagcatggacatacaaacatcatcat 31354957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 16992102 - 16992241
Alignment:
Q  19 tccaagactcaagaactcatatcctcatatcttccaagaaatgtctgagatttatactcccattatctttgatctattccaacatgagtatcagttgttt 118  Q
    ||||||||| |||||||||||| || |||| || ||| || ||||  || |||||||||| | ||| || ||  ||||||||| ||||||| ||||||||    
T  16992102 tccaagactgaagaactcatattctgatattttgcaacaagtgtccaagctttatactcctactattttcgacttattccaacgtgagtatgagttgttt 16992201  T
Q  119 gaaatctgttttgtgaagagcatgaacatacaaacatcat 158  Q
    |||   || |||||||| |||||| |||||||||||||||    
T  16992202 gaagcatgctttgtgaaaagcatggacatacaaacatcat 16992241  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 6639568 - 6639691
Alignment:
Q  23 agactcaagaactcatatcctcatatcttccaagaaatgtctgagatttatactcccattatctttgatctattccaacatgagtatcagttgtttgaaa 122  Q
    ||||| |||||||||||| | |||||||||||  || ||||| || |||| || |||| ||| ||| ||| |||||||||||||||| |||||||||||     
T  6639568 agactgaagaactcatattcacatatcttccagcaagtgtctaagctttacacccccactattttttatcaattccaacatgagtatgagttgtttgaac 6639667  T
Q  123 tctgttttgtgaagagcatgaaca 146  Q
      ||||||||||| ||||| ||||    
T  6639668 catgttttgtgaaaagcattaaca 6639691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 35897277 - 35897419
Alignment:
Q  19 tccaagactcaagaactcatatcctcatatcttccaagaaatgtctgagatttatactcccattatctttgatctattccaacatgagtatcagttgttt 118  Q
    ||||||||| |||||||||||| || |||| || ||| || ||||  || |||||| ||| | ||| || ||  ||||||||| ||||||| ||||||||    
T  35897277 tccaagactgaagaactcatattctgatattttgcaacaagtgtccaagctttataatcctactattttcgacttattccaacgtgagtatgagttgttt 35897376  T
Q  119 gaaatctgttttgtgaagagcatgaacatacaaacatcatcat 161  Q
    |||   || |||||||| |||||| ||||||||||||||||||    
T  35897377 gaagcatgctttgtgaaaagcatggacatacaaacatcatcat 35897419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 20275375 - 20275516
Alignment:
Q  20 ccaagactcaagaactcatatcctcatatcttccaagaaatgtctgagatttatactcccattatctttgatctattccaacatgagtatcagttgtttg 119  Q
    |||||||| |||||||||||| || |||| || ||| || ||||  || |||||||||| | ||| || ||  ||||||| | ||||||| ||||||||     
T  20275375 ccaagactaaagaactcatattctgatattttgcaacaagtgtccaagctttatactcctactattttcgacttattccatcgtgagtatgagttgttta 20275474  T
Q  120 aaatctgttttgtgaagagcatgaacatacaaacatcatcat 161  Q
    ||   || |||||| | |||||| ||||||||||||||||||    
T  20275475 aagcatgctttgtgcaaagcatggacatacaaacatcatcat 20275516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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