View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1655-Insertion-1 (Length: 523)

Name: NF1655-Insertion-1
Description: NF1655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1655-Insertion-1
NF1655-Insertion-1
[»] chr1 (5 HSPs)
chr1 (183-523)||(27691515-27691855)
chr1 (8-187)||(27694330-27694509)
chr1 (140-483)||(49349933-49350272)
chr1 (352-514)||(51774451-51774610)
chr1 (167-246)||(36209568-36209647)
[»] chr4 (4 HSPs)
chr4 (141-512)||(27452597-27452964)
chr4 (160-231)||(16000531-16000602)
chr4 (167-275)||(14145398-14145506)
chr4 (172-235)||(35672168-35672231)
[»] chr3 (5 HSPs)
chr3 (161-483)||(9256577-9256893)
chr3 (140-512)||(51450196-51450563)
chr3 (140-512)||(52136612-52136980)
chr3 (169-239)||(15326080-15326150)
chr3 (167-275)||(11370998-11371106)
[»] chr8 (8 HSPs)
chr8 (140-512)||(15217714-15218082)
chr8 (160-483)||(13587190-13587509)
chr8 (169-239)||(14772899-14772969)
chr8 (186-231)||(1884554-1884599)
chr8 (404-483)||(10774203-10774282)
chr8 (402-483)||(21239978-21240059)
chr8 (386-479)||(28281519-28281612)
chr8 (167-275)||(21111670-21111778)
[»] scaffold0279 (1 HSPs)
scaffold0279 (140-350)||(18677-18887)
[»] chr6 (2 HSPs)
chr6 (140-483)||(6079871-6080210)
chr6 (169-275)||(15335650-15335756)
[»] chr2 (7 HSPs)
chr2 (140-431)||(45329167-45329454)
chr2 (140-483)||(8178218-8178554)
chr2 (140-231)||(16291039-16291130)
chr2 (167-275)||(24248180-24248288)
chr2 (185-275)||(27511723-27511813)
chr2 (404-512)||(16291299-16291407)
chr2 (167-275)||(24266998-24267106)
[»] scaffold0001 (2 HSPs)
scaffold0001 (148-231)||(440388-440471)
scaffold0001 (385-512)||(440564-440691)
[»] chr5 (7 HSPs)
chr5 (164-512)||(2077967-2078311)
chr5 (150-275)||(22490593-22490719)
chr5 (150-255)||(25419-25524)
chr5 (167-275)||(3692302-3692410)
chr5 (167-275)||(3874377-3874485)
chr5 (150-231)||(26916547-26916628)
chr5 (150-229)||(21912690-21912769)
[»] scaffold0003 (2 HSPs)
scaffold0003 (167-275)||(178196-178304)
scaffold0003 (167-275)||(185137-185245)
[»] scaffold0029 (1 HSPs)
scaffold0029 (167-246)||(140029-140108)
[»] scaffold0002 (1 HSPs)
scaffold0002 (167-246)||(317496-317575)
[»] chr7 (3 HSPs)
chr7 (161-235)||(47438407-47438480)
chr7 (186-275)||(33250651-33250740)
chr7 (389-437)||(45878391-45878439)
[»] scaffold0262 (1 HSPs)
scaffold0262 (167-275)||(21355-21463)
[»] scaffold0134 (1 HSPs)
scaffold0134 (167-275)||(3431-3539)
[»] scaffold0118 (2 HSPs)
scaffold0118 (167-275)||(23287-23395)
scaffold0118 (167-275)||(26242-26350)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 183 - 523
Target Start/End: Complemental strand, 27691855 - 27691515
Alignment:
Q  183 attatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattcaagatttaagattctaa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||    
T  27691855 attatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggtgaaaaggagaaagaatcagacaattcaagatttaagattcgaa 27691756  T
Q  283 acactagcaaagttatatcgagaaatggggtagacattattatagataacatgtagaagaaggatattaattgtggatgtaaaaaggatatgcaattgca 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27691755 acactagcaaagttatatcgagaaatggggtagacattattatagataacatgtagaagaaggatattaattgtggatgtaaaaaggatatgcaattgca 27691656  T
Q  383 tcatagccctaaaattttcaatggaacaagacacctttaatgttattagtacttacaaccctcagatagggatagaagaacagcttaaagtaaagttttg 482  Q
    ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||    
T  27691655 tcataaccctaaaattttcagtgaaacaagacacctttaatgttattagtacttacaaacctcagatagggatggaagaacaacttaaagtaaagttttg 27691556  T
Q  483 gttgaatttagaaggtttaattcagaatatacaactaggat 523  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27691555 gttgaatttagaaggtttaattcagaatatacaactaggat 27691515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 27694509 - 27694330
Alignment:
Q  8 attttttgaaagtaactcgttgtatacctcatgtacaatatcaaataaacaagggctgctgcatcccacatctttgtgaacagtgtgaacaacgaagtta 107  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27694509 attttttgaaagtaactcgctgtatagctcatgtacaatatcaaataaacaagggctgttgcatcccacatctttgtgaacagtgtgaacaacgaagtta 27694410  T
Q  108 gttcatgagattatgannnnnnnnggaatagagaatataagtactcttataggaaaatctatggaaatagtggacattat 187  Q
    ||||||||||||||||         ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27694409 gttcatgagattatgatttttttcagaacagagaatataagtactcttattggaaaatctatggaaatagtggacattat 27694330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 140 - 483
Target Start/End: Complemental strand, 49350272 - 49349933
Alignment:
Q  140 gaatataagtactcttataggaaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggt 239  Q
    ||||||| |||| |||| |||||||||||||||| |||| ||||  ||||||| |||||| || ||||| ||||| |||||||||||||||| ||| ||     
T  49350272 gaatataggtacacttacaggaaaatctatggaagtagtagacacaatgactaggaggaggatcaatttcatgtgcctacaagaaactaagtgggtgggg 49350173  T
Q  240 taaaaggagaaaaaatcagacaattcaagatttaagattctaaacactagcaaagttatatcgagaaatggggtagacattattatagataacatgtaga 339  Q
     |||||| |||| ||| ||| | |||| |||||||| ||    | ||| |  |||||| ||||||||||||||||| ||| ||| | |||||   || ||    
T  49350172 aaaaaggcgaaagaattagatagttcaggatttaagctttggtatactggtgaagttagatcgagaaatggggtaggcatcattgtggataaggagtgga 49350073  T
Q  340 agaaggatattaattgtggatgtaaaaaggatatgcaattgcatcatagccctaaaattttcaatggaacaagacacctttaatgttattagtacttaca 439  Q
    |||| |||    ||||| ||||| || |||||| |  || | || |||||||||||  ||  | ||||||||||||||||| |||| |||||  || |      
T  49350072 agaaagat----attgtagatgttaataggataggagatcggattatagccctaaagattgtagtggaacaagacacctttgatgtaattagcgctaatg 49349977  T
Q  440 accctcagatagggatagaagaacagcttaaagtaaagttttgg 483  Q
      |||||| ||||| |||||| ||| |||||||| |||||||||    
T  49349976 cacctcaggtagggttagaagcacaccttaaagtgaagttttgg 49349933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 514
Target Start/End: Complemental strand, 51774610 - 51774451
Alignment:
Q  352 attgtggatgtaaaaaggatatgcaattgcatcatagccctaaaattttcaatggaacaagacacctttaatgttattagtacttacaaccctcagatag 451  Q
    ||||| ||||||||||||||| |  || | ||||||  | ||||||||  | ||||||||| |||| |||||||||||||| ||| ||  |||||   ||    
T  51774610 attgttgatgtaaaaaggataggagatcgaatcataatcttaaaatttaaagtggaacaagtcaccattaatgttattagtgcttgcacacctcaagcag 51774511  T
Q  452 ggatagaagaacagcttaaagtaaagttttggttgaatttagaaggtttaattcagaatatac 514  Q
    || ||||||| |   ||||||||| |||||||  | |||| ||||||||||||||||||||||    
T  51774510 ggttagaagacc---ttaaagtaacgttttgggaggattttgaaggtttaattcagaatatac 51774451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 36209647 - 36209568
Alignment:
Q  167 tatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaagg 246  Q
    |||||||||||| |||  ||||||||| | ||  |||||||||||||| | ||||||||||| || ||||||| ||||||    
T  36209647 tatggaaatagttgacgctatgactaaaatgaagattaattttatgtgccaacaagaaactatgtgggtaggtgaaaagg 36209568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 141 - 512
Target Start/End: Complemental strand, 27452964 - 27452597
Alignment:
Q  141 aatataagtactcttataggaaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggtt 240  Q
    |||||| |||||||| | || |||||||||||| |||| ||||||||||| | |||||| |||||||||||||| |||||||||||||||| ||| ||      
T  27452964 aatataggtactcttgtgggtaaatctatggaagtagtagacattatgaccaggaggaggattaattttatgtgcctacaagaaactaagtgggtgggga 27452865  T
Q  241 aaaaggagaaaaaatcagacaattcaagatttaagattctaaacactagcaaagttatatcgagaaatggggtagacattattatagataacatgtagaa 340  Q
    |||||| |||| ||  ||| | |||| |||||||| ||  | ||||  || |||||| ||||||||||||||||| ||| ||| | ||||||  || |||    
T  27452864 aaaaggcgaaagaagtagatagttcaggatttaagctttgatacacaggcgaagttagatcgagaaatggggtaggcatcattgtggataacgagtggaa 27452765  T
Q  341 gaaggatattaattgtggatgtaaaaaggatatgcaattgcatcatagccctaaaattttcaatggaacaagacacctttaatgttattagtacttacaa 440  Q
    ||| |||    ||||||||||| ||||||||| |  || | || ||| ||||||| |||  | |||||||||| |||||||| || |||||  ||||       
T  27452764 gaaagat----attgtggatgttaaaaggataggagatcggattatatccctaaagtttgtagtggaacaagagacctttaacgtaattagcgcttatgc 27452669  T
Q  441 ccctcagatagggatagaagaacagcttaaagtaaagttttggttgaatttagaaggtttaattcagaatat 512  Q
     |||||| ||||| |||||||||| |||||||| |||||||||  | |  ||||||| ||||||||| ||||    
T  27452668 acctcaggtagggttagaagaacaccttaaagtcaagttttgggaggagctagaaggcttaattcaggatat 27452597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 16000531 - 16000602
Alignment:
Q  160 gaaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagt 231  Q
    ||||||||||| || |||| |||| ||||||||||||||| |||||||||||||| ||| ||||||||||||    
T  16000531 gaaaatctatgcaagtagtagacactatgactaagaggaggattaattttatgtgcctaaaagaaactaagt 16000602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 14145398 - 14145506
Alignment:
Q  167 tatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattca 266  Q
    |||||||||||| |||  ||||||||| | ||  |||||||||||||| | ||||||||||| |  ||||||| |||||  |||| ||| ||| | ||||    
T  14145398 tatggaaatagttgacgctatgactaaaatgaagattaattttatgtgccaacaagaaactatgcgggtaggtgaaaagacgaaagaattagatagttca 14145497  T
Q  267 agatttaag 275  Q
    |||||||||    
T  14145498 agatttaag 14145506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 35672231 - 35672168
Alignment:
Q  172 aaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggt 235  Q
    ||||| |||| | ||||||||  |||||| ||||||||||||| |||||||||| |||||||||    
T  35672231 aaataatggatactatgactagaaggagacttaattttatgtgcctacaagaaattaagtaggt 35672168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 483
Target Start/End: Original strand, 9256577 - 9256893
Alignment:
Q  161 aaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagac 260  Q
    ||||||||||||| || | ||||||||||||| |||||| | |||||||||||| |||||||||||||||| ||| ||  |||||  |||| ||| |||     
T  9256577 aaaatctatggaagtattagacattatgactaggaggaggactaattttatgtgcctacaagaaactaagtgggt-gggaaaaagccgaaagaattagat 9256675  T
Q  261 aattcaagatttaagattctaaacactagcaaagttatatcgagaaatggggtagacattattatagataacatgtagaagaaggatattaattgtggat 360  Q
    | ||||||||||||| || |  |||||||  |||||| ||| ||||||| ||| ||||| ||| | ||| |   || |||||| |||    |||||||||    
T  9256676 agttcaagatttaagctt-tgtacactagtgaagttaaatcaagaaatgtggtggacatcattgtggatgaggagtggaagaaagat----attgtggat 9256770  T
Q  361 gtaaaaaggatatgcaattgcatcatagccctaaaattttcaatggaacaagacacctttaatgttattagtacttacaaccctcagatagggatagaag 460  Q
    || ||||||||| |  ||   || ||||||||||| |||    |||||||||||||||||||||| |||||  ||||    |||||| ||||||||||||    
T  9256771 gttaaaaggataggagatcagattatagccctaaagtttgttgtggaacaagacacctttaatgtaattagcgcttatgcacctcaggtagggatagaag 9256870  T
Q  461 aacagcttaaagtaaagttttgg 483  Q
    || | ||||||||||||||||||    
T  9256871 aaaaccttaaagtaaagttttgg 9256893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 140 - 512
Target Start/End: Complemental strand, 51450563 - 51450196
Alignment:
Q  140 gaatataagtactcttataggaaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggt 239  Q
    ||||||| |||| |||| ||||||||||||| || |||| ||||  ||||||| |||||| || ||||| ||||| |||||||||||||||| ||| ||     
T  51450563 gaatataggtacacttacaggaaaatctatgtaagtagtagacacaatgactaggaggaggatcaattt-atgtgcctacaagaaactaagtgggtgggg 51450465  T
Q  240 taaaaggagaaaaaatcagacaattcaagatttaagattctaaacactagcaaagttatatcgagaaatggggtagacattattatagataacatgtaga 339  Q
     |||||  |||| ||| ||| | |||| |||||||| ||    | ||| |  |||||| ||||||||||||||||| ||| ||| | |||||   || ||    
T  51450464 aaaaagatgaaagaattagatagttcaggatttaagctttggtatactggtgaagttagatcgagaaatggggtaggcatcattgtggataaggagtgga 51450365  T
Q  340 agaaggatattaattgtggatgtaaaaaggatatgcaattgcatcatagccctaaaattttcaatggaacaagacacctttaatgttattagtacttaca 439  Q
    |||| ||||||    || ||||| ||||||||| |  || | || |||||||||||  ||  | |||||||||||||||||||||| |||||| ||||      
T  51450364 agaaagatatt----gtagatgttaaaaggataggacatcggattatagccctaaagattgtagtggaacaagacacctttaatgtaattagtgcttatg 51450269  T
Q  440 accctcagatagggatagaagaacagcttaaagtaaagttttggttgaatttagaaggtttaattcagaatat 512  Q
      |||||| ||||| |||||| ||| |||||||| |||||||||  | |  ||||||| ||||||||| ||||    
T  51450268 cacctcaggtagggttagaagcacaccttaaagtgaagttttgggaggagctagaaggcttaattcaggatat 51450196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 512
Target Start/End: Original strand, 52136612 - 52136980
Alignment:
Q  140 gaatataagtactcttataggaaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggt 239  Q
    |||||||  ||| |||| |||||||||||||||| |||| ||||  ||||||| |||||| || ||||| || || |||||||||||||||| ||| ||     
T  52136612 gaatatagatacacttacaggaaaatctatggaagtagtagacacaatgactaggaggaggatcaatttcatatgcctacaagaaactaagtgggtggga 52136711  T
Q  240 taaaaggagaaaaaatcagacaattcaagatttaagattctaaacactagcaaagttatatcgagaaatggggtagacattattatagataacatgtaga 339  Q
     |||| | |||| ||| ||| | || | |||||||| ||    | ||||| ||||||| ||||||||||||||||| ||| ||| | |||||   || ||    
T  52136712 aaaaaagcgaaagaattagatagttaaggatttaagctttggtaaactagaaaagttagatcgagaaatggggtaggcatcattgtggataaggagtgga 52136811  T
Q  340 agaaggatattaattgtggatgtaaaaaggatatgcaattgcatcatagccctaaaattttcaatggaacaagacacctttaatgttattagtacttaca 439  Q
    |||| |||    ||||| ||||| ||||||||| |  || | || |||||||||||  ||  | |||||||||||||||||||||| |||||  ||||      
T  52136812 agaaagat----attgtagatgttaaaaggataggagatcggattatagccctaaagattgtagtggaacaagacacctttaatgtaattagcgcttatg 52136907  T
Q  440 accctcagatagggatagaagaacagcttaaagtaaagttttggttgaatttagaaggtttaattcagaatat 512  Q
      |||||  ||||| |||||| ||| |||||||| |||||||||  | |  ||||||| ||||||||| ||||    
T  52136908 cacctcatgtagggttagaagcacaccttaaagtgaagttttgggaggagctagaaggcttaattcaggatat 52136980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 15326080 - 15326150
Alignment:
Q  169 tggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggt 239  Q
    ||||||| || ||| || ||||||||||||  |||||||||||||| | |||||||||||||| |||||||    
T  15326080 tggaaattgttgacgttgtgactaagaggaagattaattttatgtgccaacaagaaactaagtgggtaggt 15326150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 11371106 - 11370998
Alignment:
Q  167 tatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattca 266  Q
    |||||||||| | |||  ||||||||| | ||  |||||||||||||| | ||||||||||| || ||||||| |||||| |||| ||| ||| | ||||    
T  11371106 tatggaaataattgacgctatgactaaaatgaagattaattttatgtgccaacaagaaactatgtgggtaggtgaaaaggcgaaagaattagatagttca 11371007  T
Q  267 agatttaag 275  Q
    || ||||||    
T  11371006 aggtttaag 11370998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 512
Target Start/End: Complemental strand, 15218082 - 15217714
Alignment:
Q  140 gaatataagtactcttataggaaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggt 239  Q
    ||||||| |||||||||   | |||||||||||| |||| |||| |||||| | |||||| | ||||||||||||||||||||||||||||| ||| ||     
T  15218082 gaatataggtactcttacgtgtaaatctatggaagtagtagacactatgacaaggaggaggactaattttatgtgtctacaagaaactaagtgggtgggg 15217983  T
Q  240 taaaaggagaaaaaatcagacaattcaagatttaagattctaaacactagcaaagttatatcgagaaatggggtagacattattatagataacatgtaga 339  Q
     |||||| |||| ||| ||| | |||| |||||||| ||    ||||  || |||||| |||||||||| |||||||||| ||| | |||||   || ||    
T  15217982 aaaaaggtgaaagaattagatagttcaggatttaagctttggtacacgggcgaagttagatcgagaaatagggtagacatcattgtggataaggagtgga 15217883  T
Q  340 agaaggatattaattgtggatgtaaaaaggatatgcaattgcatcatagccctaaaattttcaatggaacaagacacctttaatgttattagtacttaca 439  Q
    |||| |||    ||||| ||||| |||| |||| |   | | || ||||||||||| |||  | |||||||||||||||||||  | |||||| ||||      
T  15217882 agaaagat----attgttgatgttaaaatgataggaggtcggattatagccctaaagtttgtagtggaacaagacacctttaacataattagtgcttatg 15217787  T
Q  440 accctcagatagggatagaagaacagcttaaagtaaagttttggttgaatttagaaggtttaattcagaatat 512  Q
      | |||| ||||| |||||||||| |||||||| |||||||||  | ||  |||||| ||||||||| ||||    
T  15217786 cacatcaggtagggttagaagaacaccttaaagttaagttttgggaggatcaagaaggcttaattcaggatat 15217714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 160 - 483
Target Start/End: Original strand, 13587190 - 13587509
Alignment:
Q  160 gaaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcaga 259  Q
    ||||| |||||||| ||||||||| |||||||| ||| |  |||||||||||||| ||| || | ||||||| ||| ||| ||| || |||| ||| |||    
T  13587190 gaaaacctatggaagtagtggacactatgactaggagaatgattaattttatgtgcctataaaatactaagt-ggtgggtaaaagggcgaaataattaga 13587288  T
Q  260 caattcaagatttaagattctaaacactagcaaagttatatcgagaaatggggtagacattattatagataacatgtagaagaaggatattaattgtgga 359  Q
     | ||||||||||||| ||    ||    | ||||||| | ||||||||||| ||||||||||||| |||||   || |||||| |||||   |||||||    
T  13587289 tagttcaagatttaagctttggtacgtgggtaaagttagagcgagaaatgggatagacattattatggataaggagtggaagaaagatat---ttgtgga 13587385  T
Q  360 tgtaaaaaggatatgcaattgcatcatagccctaaaattttcaatggaacaagacacctttaatgttattagtacttacaaccctcagatagggatagaa 459  Q
    | | ||||||||| |  ||   || ||| |||||||||||  ||||||||||||||| || |||||||||||  |  ||    || || ||||| |||||    
T  13587386 ttttaaaaggataggagatcaaattatatccctaaaatttgtaatggaacaagacactttcaatgttattagcgcacacgcatcttaggtagggttagaa 13587485  T
Q  460 gaacagcttaaagtaaagttttgg 483  Q
    ||||| ||||||||||||||||||    
T  13587486 gaacaccttaaagtaaagttttgg 13587509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 14772969 - 14772899
Alignment:
Q  169 tggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggt 239  Q
    ||||||| || ||| || ||||||||||||  |||||||||||||| | |||||||||||||| |||||||    
T  14772969 tggaaattgttgacgttgtgactaagaggaagattaattttatgtgccaacaagaaactaagtgggtaggt 14772899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 1884599 - 1884554
Alignment:
Q  186 atgactaagaggagaattaattttatgtgtctacaagaaactaagt 231  Q
    ||||||| |||||| |||||||||||||| ||||||||||||||||    
T  1884599 atgactaggaggaggattaattttatgtgcctacaagaaactaagt 1884554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 483
Target Start/End: Complemental strand, 10774282 - 10774203
Alignment:
Q  404 tggaacaagacacctttaatgttattagtacttacaaccctcagatagggatagaagaacagcttaaagtaaagttttgg 483  Q
    ||||||||||||| |||||||||||| ||  ||||   ||||| |||||| |||||||||| || |||||||| ||||||    
T  10774282 tggaacaagacacatttaatgttattggtgtttacgcacctcaaatagggttagaagaacacctcaaagtaaatttttgg 10774203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 483
Target Start/End: Complemental strand, 21240059 - 21239978
Alignment:
Q  402 aatggaacaagacacctttaatgttattagtacttacaaccctcagatagggatagaagaacagcttaaagtaaagttttgg 483  Q
    ||||||| |||||| |||||||||||||||  ||||| |  ||||  ||||| |||||||| | ||||||||||||| ||||    
T  21240059 aatggaaaaagacaactttaatgttattagagcttacgaatctcatgtagggttagaagaataccttaaagtaaagtgttgg 21239978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 28281519 - 28281612
Alignment:
Q  386 tagccctaaaattttcaatggaacaagacacctttaatgttattagtacttacaaccctcagatagggatagaagaacagcttaaagtaaagtt 479  Q
    ||||| ||||||||  |||||||||||| || |||||||| |||||| |||||   ||| || | ||| ||| |||||| ||||||||||||||    
T  28281519 tagccataaaatttgtaatggaacaagatacatttaatgtcattagttcttacgcaccttaggttgggttagcagaacaccttaaagtaaagtt 28281612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 21111670 - 21111778
Alignment:
Q  167 tatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattca 266  Q
    |||||||||||| |||  ||||||||| | ||  |||||||||||||| |  ||| |||||| || ||||||| |||||| |||| ||| ||| | ||||    
T  21111670 tatggaaatagttgacgctatgactaaaatgaagattaattttatgtgccagcaaaaaactatgtgggtaggtgaaaaggcgaaagaattagatagttca 21111769  T
Q  267 agatttaag 275  Q
    |||| ||||    
T  21111770 agatataag 21111778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 140 - 350
Target Start/End: Original strand, 18677 - 18887
Alignment:
Q  140 gaatataagtactcttataggaaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggt 239  Q
    ||||||| ||| |||||  || |||||||||||| |||| ||||  |||| || ||| || || |||| |||||| |||||||||||||||| ||| ||     
T  18677 gaatataggtaatcttacgggtaaatctatggaagtagtagacacaatgattaggagaaggataaattatatgtgcctacaagaaactaagtgggtgggg 18776  T
Q  240 taaaaggagaaaaaatcagacaattcaagatttaagattctaaacactagcaaagttatatcgagaaatggggtagacattattatagataacatgtaga 339  Q
     ||||||||||| ||| ||| |||||| |||||||| ||    ||||||||  ||||| ||||||||||||||||| ||| ||| | |||||   |||||    
T  18777 aaaaaggagaaagaattagataattcaggatttaagctttggtacactagcgtagttagatcgagaaatggggtaggcatcattgtggataaggagtaga 18876  T
Q  340 agaaggatatt 350  Q
    |||| ||||||    
T  18877 agaaagatatt 18887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 140 - 483
Target Start/End: Original strand, 6079871 - 6080210
Alignment:
Q  140 gaatataagtactcttataggaaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggt 239  Q
    ||||||| |||| |||| |||||||||||||||| |||  ||||  ||||||| |||||| || ||||| ||||| |||||||||||||||| ||| ||     
T  6079871 gaatataggtacacttacaggaaaatctatggaagtagaagacacaatgactaggaggaggatcaatttcatgtgcctacaagaaactaagtgggtggga 6079970  T
Q  240 taaaaggagaaaaaatcagacaattcaagatttaagattctaaacactagcaaagttatatcgagaaatggggtagacattattatagataacatgtaga 339  Q
     |||||| |||| ||| ||| | |||| |||||||| ||    | ||| |  |||||| ||||||||||||||||| ||| ||| | |||||   || ||    
T  6079971 aaaaaggcgaaagaattagatagttcaggatttaagctttggtatactggtcaagttagatcgagaaatggggtaggcatcattgtggataaggagtgga 6080070  T
Q  340 agaaggatattaattgtggatgtaaaaaggatatgcaattgcatcatagccctaaaattttcaatggaacaagacacctttaatgttattagtacttaca 439  Q
    |||| |||    ||||| ||||| ||||||||| |   | | || |||||||||||  ||  | |||||||||||||||||||||| |||||  ||||      
T  6080071 agaaagat----attgtagatgttaaaaggataggaggtcggattatagccctaaagattgtagtggaacaagacacctttaatgtaattagcgcttatg 6080166  T
Q  440 accctcagatagggatagaagaacagcttaaagtaaagttttgg 483  Q
      |||||| ||||| |||||| ||| |||||||| ||| |||||    
T  6080167 cacctcaggtagggttagaagcacaccttaaagtgaagctttgg 6080210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 275
Target Start/End: Complemental strand, 15335756 - 15335650
Alignment:
Q  169 tggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattcaag 268  Q
    |||||||||| |||  ||||||||| | ||  |||||||||||||| | |||| |||||| || |||| || |||||| |||| ||| ||| | ||||||    
T  15335756 tggaaatagttgacgctatgactaaaatgaagattaattttatgtgccaacaaaaaactatgtgggtacgtgaaaaggcgaaagaattagatagttcaag 15335657  T
Q  269 atttaag 275  Q
    |||||||    
T  15335656 atttaag 15335650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 140 - 431
Target Start/End: Complemental strand, 45329454 - 45329167
Alignment:
Q  140 gaatataagtactcttataggaaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggt 239  Q
    ||||||| |||||||||  || |||||||| |||||||| |||| ||||| || |||||| || ||||||||||| |||||||| ||||||| |||  |     
T  45329454 gaatataggtactcttacgggtaaatctatagaaatagtagacactatgattaggaggaggatcaattttatgtgcctacaagagactaagtgggtgagg 45329355  T
Q  240 taaaaggagaaaaaatcagacaattcaagatttaagattctaaacactagcaaagttatatcgagaaatggggtagacattattatagataacatgtaga 339  Q
     |||||| |||| ||| ||| | |||| |||||||| ||    ||||  || |||||| ||||||||||||||||| ||| ||| | |||||   || ||    
T  45329354 aaaaaggcgaaagaattagatagttcaggatttaagctttggtacacgggcgaagttagatcgagaaatggggtaggcataattgtggataaggagtgga 45329255  T
Q  340 agaaggatattaattgtggatgtaaaaaggatatgcaattgcatcatagccctaaaattttcaatggaacaagacacctttaatgttattag 431  Q
    |||| |||    ||||||||||| ||||||||| |  || | || ||||||||||| |||  | |||||||||||| |||||| || |||||    
T  45329254 agaaagat----attgtggatgttaaaaggataggagatcggattatagccctaaagtttgtagtggaacaagacatctttaacgtaattag 45329167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 140 - 483
Target Start/End: Original strand, 8178218 - 8178554
Alignment:
Q  140 gaatataagtactcttataggaaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggt 239  Q
    ||||||| |||| |||| |||||||||||||||| |||   |||  ||||||| |||||| || ||||| ||||| ||||||||||| |||| ||| ||     
T  8178218 gaatataggtacacttacaggaaaatctatggaagtag---acacaatgactaggaggaggatcaatttcatgtgcctacaagaaacaaagtgggtgggg 8178314  T
Q  240 taaaaggagaaaaaatcagacaattcaagatttaagattctaaacactagcaaagttatatcgagaaatggggtagacattattatagataacatgtaga 339  Q
     |||||| |||| ||| ||| | |||| |||||||| ||    | |||||  |||||| ||||||||||||||||| ||| ||| | |||||   || ||    
T  8178315 aaaaaggcgaaagaattagatagttcatgatttaagctttggtatactagtgaagttagatcgagaaatggggtaggcatcattgtggataaggagtgga 8178414  T
Q  340 agaaggatattaattgtggatgtaaaaaggatatgcaattgcatcatagccctaaaattttcaatggaacaagacacctttaatgttattagtacttaca 439  Q
    |||| |||    ||||| ||||| ||||||||| |  || | || |||||||||||  ||  | |||||||||||||||||||||| |||||  ||||      
T  8178415 agaaagat----attgtagatgttaaaaggataggagatcggattatagccctaaagattgtagtggaacaagacacctttaatgtaattagcgcttatg 8178510  T
Q  440 accctcagatagggatagaagaacagcttaaagtaaagttttgg 483  Q
      ||||||  |||| |||||| ||| |||||||| |||||||||    
T  8178511 cacctcaggcagggttagaagcacaccttaaagtgaagttttgg 8178554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 16291039 - 16291130
Alignment:
Q  140 gaatataagtactcttataggaaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagt 231  Q
    ||||||| |||| |||| |||||||||||||||| |||| ||||  ||||||| |||||| || ||||| || || ||||||||||||||||    
T  16291039 gaatataggtacacttacaggaaaatctatggaagtagtagacacaatgactaggaggaggatcaatttcatatgcctacaagaaactaagt 16291130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 24248288 - 24248180
Alignment:
Q  167 tatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattca 266  Q
    ||||||||||||  ||  ||||||||| | ||  |||||||||||||| | |||| |||||| || ||||||| |||||| |||| ||| ||| | ||||    
T  24248288 tatggaaatagttaacgctatgactaaaatgaagattaattttatgtgccaacaaaaaactatgtgggtaggtgaaaaggtgaaagaattagatagttca 24248189  T
Q  267 agatttaag 275  Q
    |||||||||    
T  24248188 agatttaag 24248180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 27511813 - 27511723
Alignment:
Q  185 tatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattcaagatttaag 275  Q
    ||||||||| | || ||||||||||||||  | ||||||||| | || ||||||| |||||| |||| ||| ||| | |||||||||||||    
T  27511813 tatgactaaaatgaaaattaattttatgtcccaacaagaaacaatgtgggtaggtgaaaaggcgaaagaattagatagttcaagatttaag 27511723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 512
Target Start/End: Original strand, 16291299 - 16291407
Alignment:
Q  404 tggaacaagacacctttaatgttattagtacttacaaccctcagatagggatagaagaacagcttaaagtaaagttttggttgaatttagaaggtttaat 503  Q
    |||||||||||||||||||||| |||||  ||||    |||||| ||||| || ||| ||| |||||||| |||||||||  | |  ||||||| |||||    
T  16291299 tggaacaagacacctttaatgtaattagcgcttatgcacctcaggtagggttacaagcacaccttaaagtgaagttttgggaggagctagaaggcttaat 16291398  T
Q  504 tcagaatat 512  Q
    |||| ||||    
T  16291399 tcaggatat 16291407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 24266998 - 24267106
Alignment:
Q  167 tatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattca 266  Q
    |||||||||||| |||  ||||||||| | ||  |||||||||||||| |  ||| |||||| || ||||||| |||||| |||| ||| ||| | ||||    
T  24266998 tatggaaatagttgacgctatgactaaaatgaagattaattttatgtgccagcaaaaaactatgtgggtaggtgaaaaggcgaaagaattagatagttca 24267097  T
Q  267 agatttaag 275  Q
    |||| ||||    
T  24267098 agatataag 24267106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 440388 - 440471
Alignment:
Q  148 gtactcttataggaaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagt 231  Q
    |||||||||| ||||||||||||||| |||| |||| |||||||| |||||| || ||||||||||| |||||||| |||||||    
T  440388 gtactcttatgggaaaatctatggaagtagtagacactatgactaggaggagcatcaattttatgtgcctacaagagactaagt 440471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 512
Target Start/End: Original strand, 440564 - 440691
Alignment:
Q  385 atagccctaaaattttcaatggaacaagacacctttaatgttattagtacttacaaccctcagatagggatagaagaacagcttaaagtaaagttttggt 484  Q
    ||||||||||| |||  | |||||||||||||||| ||||| |||||  ||||    |||||| ||||| |||||||||| ||||||||||||||||||     
T  440564 atagccctaaagtttgtagtggaacaagacaccttaaatgtaattagcgcttatgcacctcaggtagggttagaagaacaccttaaagtaaagttttggg 440663  T
Q  485 tgaatttagaaggtttaattcagaatat 512  Q
     | |  ||||||| ||||||||| ||||    
T  440664 aggagctagaaggcttaattcaggatat 440691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 512
Target Start/End: Complemental strand, 2078311 - 2077967
Alignment:
Q  164 atctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaat 263  Q
    |||||||||| |||| ||||  ||||||| |||||  || ||||| ||||| |||||||||||||||  ||| ||  |||||| |||| ||| ||| | |    
T  2078311 atctatggaagtagtagacacaatgactaggaggaagatcaatttcatgtgcctacaagaaactaagcgggtggggaaaaaggcgaaagaattagatagt 2078212  T
Q  264 tcaagatttaagattctaaacactagcaaagttatatcgagaaatggggtagacattattatagataacatgtagaagaaggatattaattgtggatgta 363  Q
    ||| |||||||| ||    | ||| |  |||||| ||||||||||||||||| |||  || | |||||   || |||||| ||||||    || |||||     
T  2078211 tcaggatttaagctttggtatactggtgaagttagatcgagaaatggggtaggcatctttgtggataaggagtggaagaaagatatt----gtagatgtt 2078116  T
Q  364 aaaaggatatgcaattgcatcatagccctaaaattttcaatggaacaagacacctttaatgttattagtacttacaaccctcagatagggatagaagaac 463  Q
    ||||||||| |  || | || |||||||||||  ||  | |||||||||||||||||||||| |||||  ||||    |||||| ||||| |||||| ||    
T  2078115 aaaaggataggagatcggattatagccctaaagattgtagtggaacaagacacctttaatgtaattagcgcttatgcacctcaggtagggttagaagcac 2078016  T
Q  464 agcttaaagtaaagttttggttgaatttagaaggtttaattcagaatat 512  Q
    | |||||||| |||||||||  | |  ||||||| ||||||||| ||||    
T  2078015 accttaaagtgaagttttgggaggagctagaaggcttaattcaggatat 2077967  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 150 - 275
Target Start/End: Complemental strand, 22490719 - 22490593
Alignment:
Q  150 actcttataggaaaatctatggaaatagtggacattatgactaagaggagaatt-aattttatgtgtctacaagaaactaagtaggtaggttaaaaggag 248  Q
    |||||||||||||||||||| ||| ||||||||| || ||||| |||||| ||| ||||||||||  || ||||||||||| | ||| ||  |||||||     
T  22490719 actcttataggaaaatctatcgaagtagtggacactaggactaggaggaggattaaattttatgttcctgcaagaaactaattgggtgggcgaaaaggaa 22490620  T
Q  249 aaaaaatcagacaattcaagatttaag 275  Q
    ||  ||| ||| | |||||||||||||    
T  22490619 aactaattagatagttcaagatttaag 22490593  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 25419 - 25524
Alignment:
Q  150 actcttataggaaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggaga 249  Q
    |||||||| |||||||||||||||  |||||||| |||||||  |||||| |||| |||||  ||  ||||||||||| ||| ||||||| |||| | ||    
T  25419 actcttatgggaaaatctatggaagcagtggacactatgacttggaggaggattagttttagttgcatacaagaaactgagtgggtaggtgaaaaagcga 25518  T
Q  250 aaaaat 255  Q
    ||||||    
T  25519 aaaaat 25524  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 3692410 - 3692302
Alignment:
Q  167 tatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattca 266  Q
    |||||||||||| |||  ||||||||| | ||  |||||||||||||| | ||||||||||| || ||||||  |||||| |||| ||| ||| | ||||    
T  3692410 tatggaaatagttgacgctatgactaaaatgaagattaattttatgtgccaacaagaaactatgtgggtaggcgaaaaggcgaaagaattagatagttca 3692311  T
Q  267 agatttaag 275  Q
    |||||||||    
T  3692310 agatttaag 3692302  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 3874377 - 3874485
Alignment:
Q  167 tatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattca 266  Q
    |||||||||||| |||  ||||||||| | ||  |||||||||||||| | ||||||||||| || ||||||  |||||| |||| ||| ||| | ||||    
T  3874377 tatggaaatagttgacgctatgactaaaatgaagattaattttatgtgccaacaagaaactatgtgggtaggcgaaaaggcgaaagaattagatagttca 3874476  T
Q  267 agatttaag 275  Q
    |||||||||    
T  3874477 agatttaag 3874485  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 26916547 - 26916628
Alignment:
Q  150 actcttataggaaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagt 231  Q
    ||||||| |||||| | |||||||||| |||||||||||| || |||||| || ||||| ||  | ||||||||||||||||    
T  26916547 actcttacaggaaagtgtatggaaatattggacattatgattaggaggaggatcaatttcatacgcctacaagaaactaagt 26916628  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 21912690 - 21912769
Alignment:
Q  150 actcttataggaaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaa 229  Q
    ||||||| ||||||||||| ||||| |||||||| ||||| || |||||| || |||||||| |  || |||||||||||    
T  21912690 actcttacaggaaaatctacggaaagagtggacagtatgattaggaggaggatcaattttattttcctgcaagaaactaa 21912769  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 178304 - 178196
Alignment:
Q  167 tatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattca 266  Q
    |||||||||||| |||  ||||||||| | ||  |||||||||||||| | ||||||||||| || ||||||  |||||| |||| ||| ||| | ||||    
T  178304 tatggaaatagttgacgctatgactaaaatgaagattaattttatgtgccaacaagaaactatgtgggtaggcgaaaaggcgaaagaattagatagttca 178205  T
Q  267 agatttaag 275  Q
    |||||||||    
T  178204 agatttaag 178196  T

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Target: scaffold0003; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 185245 - 185137
Alignment:
Q  167 tatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattca 266  Q
    |||||||||||| |||  ||||||||| | ||  |||||||||||||| | ||||||||||| || ||||||  |||||| |||| ||| ||| | ||||    
T  185245 tatggaaatagttgacgctatgactaaaatgaagattaattttatgtgccaacaagaaactatgtgggtaggcgaaaaggcgaaagaattagatagttca 185146  T
Q  267 agatttaag 275  Q
    |||||||||    
T  185145 agatttaag 185137  T

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Target: scaffold0029 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 140029 - 140108
Alignment:
Q  167 tatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaagg 246  Q
    |||||||||||| |||  ||||||||| | ||  |||||||||||||| | |||| |||||| |||||||||| ||||||    
T  140029 tatggaaatagttgacgctatgactaaaatgaagattaattttatgtgccaacaaaaaactatgtaggtaggtgaaaagg 140108  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 317496 - 317575
Alignment:
Q  167 tatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaagg 246  Q
    |||||||||||| |||  ||||||||| | ||  |||||||||||||| | |||| |||||| |||||||||| ||||||    
T  317496 tatggaaatagttgacgctatgactaaaatgaagattaattttatgtgccaacaaaaaactatgtaggtaggtgaaaagg 317575  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 47438407 - 47438480
Alignment:
Q  161 aaaatctatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggt 235  Q
    ||||| |||||||||| |||||| |||||||| || ||| || ||||||| ||| |||| |||||||||||||||    
T  47438407 aaaatttatggaaata-tggacaatatgactaggatgaggataaattttacgtgcctacgagaaactaagtaggt 47438480  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 33250651 - 33250740
Alignment:
Q  186 atgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattcaagatttaag 275  Q
    |||||||| ||||  |||||||||||||| ||||| |||||||| | ||| ||| ||||||| ||| ||||| | |  ||||||||||||    
T  33250651 atgactaaaaggatgattaattttatgtgcctacatgaaactaaatgggtgggtgaaaaggaaaaagaatcatataggtcaagatttaag 33250740  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 437
Target Start/End: Complemental strand, 45878439 - 45878391
Alignment:
Q  389 ccctaaaattttcaatggaacaagacacctttaatgttattagtactta 437  Q
    |||||||||||  | ||||||||||||| ||||||||||||||| ||||    
T  45878439 ccctaaaatttgtagtggaacaagacacttttaatgttattagtgctta 45878391  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 21463 - 21355
Alignment:
Q  167 tatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattca 266  Q
    |||||||||||| |||  ||||||||| | ||  |||||||||||||| |  ||| |||||| || ||||||| |||||| |||| ||| ||| | ||||    
T  21463 tatggaaatagttgacgctatgactaaaatgaagattaattttatgtgccagcaaaaaactatgtgggtaggtgaaaaggcgaaagaattagatagttca 21364  T
Q  267 agatttaag 275  Q
    |||| ||||    
T  21363 agatataag 21355  T

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Target: scaffold0134 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 3431 - 3539
Alignment:
Q  167 tatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattca 266  Q
    |||||||||||| ||| |||||| ||| | ||  |||||||||||||| |  ||| |||||| || ||||||| |||||| |||| ||| ||| | ||||    
T  3431 tatggaaatagttgacgttatgattaaaatgaagattaattttatgtgccagcaaaaaactatgtgggtaggtgaaaaggcgaaagaattagatagttca 3530  T
Q  267 agatttaag 275  Q
    |||| ||||    
T  3531 agatataag 3539  T

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Target: scaffold0118 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 23287 - 23395
Alignment:
Q  167 tatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattca 266  Q
    |||||||||||| |||  ||||||||| | ||  |||||||||||||| |  ||| |||||| || ||||||| |||||| |||| ||| ||| | ||||    
T  23287 tatggaaatagttgacgctatgactaaaatgaagattaattttatgtgccagcaaaaaactatgtgggtaggtgaaaaggcgaaagaattagatagttca 23386  T
Q  267 agatttaag 275  Q
    |||| ||||    
T  23387 agatataag 23395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 26242 - 26350
Alignment:
Q  167 tatggaaatagtggacattatgactaagaggagaattaattttatgtgtctacaagaaactaagtaggtaggttaaaaggagaaaaaatcagacaattca 266  Q
    |||||||||||| |||  ||||||||| | ||  |||||||||||||| |  ||| |||||| || ||||||| |||||| |||| ||| ||| | ||||    
T  26242 tatggaaatagttgacgctatgactaaaatgaagattaattttatgtgccagcaaaaaactatgtgggtaggtgaaaaggcgaaagaattagatagttca 26341  T
Q  267 agatttaag 275  Q
    |||| ||||    
T  26342 agatataag 26350  T

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