View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1655-Insertion-2 (Length: 385)
Name: NF1655-Insertion-2
Description: NF1655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1655-Insertion-2 |
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| [»] scaffold0094 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0094 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 7 - 385
Target Start/End: Original strand, 7312 - 7689
Alignment:
| Q |
7 |
attgttaagaagcataaattagaattaatgtctggtctcaagactgaattgtacaatgtgtaaaagacaacaacaattgacttagatgttcttgctagtt |
106 |
Q |
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| T |
7312 |
attgttaagaagcataaattcaaattagtgtatggtctcagcactgaattgtacaatgtgaaaaagacag-aacaattgacttagatgttcttgctagtt |
7410 |
T |
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| Q |
107 |
ttgtttcaaatctatatgatggaattgttaggctgaaacaactagtggaaaatgagtttcgtgaggatgaatgggtcataattttgtgatgtctaaaaag |
206 |
Q |
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| T |
7411 |
ctgtttcaaatctatatgatggaattgttaggctgaaacaactagtggaaaatgagtttcatgaggatgaatgagtcataattttgtgatgtctacaaag |
7510 |
T |
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| Q |
207 |
ttgttcttgcgatatgtggatggaaatttgaagaagttaagaggagatgaagatagagttataacacgtgttaaagaaataaaagaatattttcatggag |
306 |
Q |
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| T |
7511 |
ttgttcttgcaatatgtggatggaaatttgaagaagttaagaggagatgaagatagagttataacacgtgttaaagaaataaaagaatattttcatggag |
7610 |
T |
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| Q |
307 |
ttgtcagtaaagaggataatccacttaggatatttgctattgtaagagattttatgggaatgttggataatgtttgtaa |
385 |
Q |
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| T |
7611 |
atgtcagtaaagaggataatccacttaggatatttgttattgtgagagattttatgggaatgttggataatgtttgtaa |
7689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 26 - 385
Target Start/End: Complemental strand, 37052025 - 37051665
Alignment:
| Q |
26 |
tagaattaatgtctggtctcaagactgaattgtacaatgtgtaaaagacaacaacaattgacttagatgttcttgctagttttgtttcaaatctatatga |
125 |
Q |
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| T |
37052025 |
tagaactagtgtctggtctaagtactgaattgtacaatgttaaaaagacagcaacaattgacttagatgttcttgctagttctgtttcaaatctatacga |
37051926 |
T |
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| Q |
126 |
tggaattgttaggctgaaacaactagtggaaaatgagtttcgtgaggatgaa-tgggtcataattttgtgatgtctaaaaagttgttcttgcgatatgtg |
224 |
Q |
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| T |
37051925 |
tggaatggttaggctgaaacaactagtggaaaatgagttgcatgaagatgaaatgtgtcataattttgtgatgtctatgaagttgttcttgcaatatgtg |
37051826 |
T |
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| Q |
225 |
gatggaaatttgaagaagttaagaggagatgaagatagagttataacacgtgttaaagaaataaaagaatattttcatggagttgtcagtaaagaggata |
324 |
Q |
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| T |
37051825 |
gatggaaatttgaaggagttaagaggagatgaagatagagtgatagcacgtgttaaagaaataacagaatattttcatggagatgttagtaaggaggata |
37051726 |
T |
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| Q |
325 |
atccacttaggatatttgctattgtaagagattttatgggaatgttggataatgtttgtaa |
385 |
Q |
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| T |
37051725 |
atccacttaggatatttgttattgtgagagattttatgggaatgttggataatgtttgtaa |
37051665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 17217984 - 17217610
Alignment:
| Q |
8 |
ttgttaagaagcataaattagaattaatgtctggtctcaagactgaattgtacaatgtgtaaaagacaacaacaattgacttagatgt-tcttgctagtt |
106 |
Q |
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| T |
17217984 |
ttgttaagaagcataaattcgacttagtgtctgctctcaacactta-ttatacaatgttaaaaagacaacaacaattgaattagatttgttttgctagtt |
17217886 |
T |
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| Q |
107 |
ttgtttcaaatctatatgatggaattgttaggctgaaacaactagtggaaaatgagtttcgtgaggatgaatgggtcataattttgtgatgtctaaaaag |
206 |
Q |
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| T |
17217885 |
ctgtttcaaatttatacaatggaatggttaggctgaaacaactagtggcaaatgagttgcatgaggatgaatgagtcataattttgtgatgtctatgaat |
17217786 |
T |
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| Q |
207 |
ttgttcttgcgatatgtggatggaaatttgaagaagttaagaggagatgaagatagagttataacacgtgttaaagaaataaaagaatattttcatggag |
306 |
Q |
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| T |
17217785 |
ttggtcttgcaatatgtggatggaaatttggag---ttaagaggagatgaagatagagttataacacgtgttaaagaaataacaaaatattttcatggag |
17217689 |
T |
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| Q |
307 |
ttgtcagtaaagaggataatccacttaggatatttgctattgtaagagattttatgggaatgttggataatgtttgtaa |
385 |
Q |
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| T |
17217688 |
atgttagtaaagaggataatccacttggggtatttgttattgtgagagattttatgggaatgttagataatctttgtaa |
17217610 |
T |
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