View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1655-Insertion-3 (Length: 588)
Name: NF1655-Insertion-3
Description: NF1655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1655-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 110 - 588
Target Start/End: Complemental strand, 54265904 - 54265429
Alignment:
| Q |
110 |
gaagagtacctagaaagtgcattatatttatacttgatatgaatgaaaaaatattttccttttagttttttccattgatttatttggagaattttgaaat |
209 |
Q |
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| T |
54265904 |
gaagagtacctagaaagtgcattatatttatacttgatatgaatgaaacg-tattttccttttagttttttccattgatt-atttggagaattttgaaat |
54265807 |
T |
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| Q |
210 |
aaaatatagtatgttgtaaccnnnnnnnnnnnnnnnnnnnnncaatttgaagtgtcaacgctcaaacagtagcgccccgtatgtaggtgtaactacctca |
309 |
Q |
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| T |
54265806 |
aaaatatagtatgttgtaaccaaaaaaaaaaaaaaaaaaga-caatttgaagtgtcaacgctcaaacagtagcgccccgtatgtaggtgtaactacctca |
54265708 |
T |
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| Q |
310 |
tgtcgacgattaaagaggatatgttctttagttttagggtccataggtgctcttctgccatttctatatttgtgagcgatctaaaatcttaaatgttggt |
409 |
Q |
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| T |
54265707 |
tgtcgacgattaaagaggatatgttctttagttttagggtccataggtgctcttctgccatttctatatttgtgagcaatctaaaatcttaaatgttggt |
54265608 |
T |
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| Q |
410 |
agggcctcggatttatatcatggtctcagtaatcacatttactacctcttacggtggatgtatagaattcaagatgtatgtggtcgtacatatgcacgta |
509 |
Q |
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| T |
54265607 |
agggcctcggatttatatcatggtctcagtaatcacatttactacctcttacggtggatgtatagaattcaagatgtatgtggtcgtacatatgcacgta |
54265508 |
T |
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| Q |
510 |
attttaagggtaaagttcttaaatgtgtgaggcaatgtattgaaattgcaaatgtatctctaatgtctttttgttagta |
588 |
Q |
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| T |
54265507 |
attttaagggtaaagttcttaaatgtgtgaggcaatgtattgaaattgcaaatgtatctctaatgtctttttgttagta |
54265429 |
T |
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