View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1655-Insertion-4 (Length: 337)

Name: NF1655-Insertion-4
Description: NF1655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1655-Insertion-4
NF1655-Insertion-4
[»] chr3 (1 HSPs)
chr3 (9-337)||(32342812-32343140)


Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 337
Target Start/End: Complemental strand, 32343140 - 32342812
Alignment:
Q  9 ctgcctcaatttcttctacttcatatgttgtgtaaagatggacactgccacagtgctgaagacagaaaaacaagccatcacaattggtatttctgtattc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32343140 ctgcctcaatttcttctacttcatatgttgtgtaaagatggacactgccacagtgctgaagacagaaaaacaagccatcacaattggtatttctgtattc 32343041  T
Q  109 tcattttcattagtaatccctcttggattagcctttgcaatgaaaaaatatgtttccatggacaaaaccctctcggacgctctcccaatgatagctatct 208  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32343040 tcattttcattaggaatccctcttggattagcctttgcaatgaaaaaatatgtttccatggacaaaaccctctcggacgctctcccaatgatagctatct 32342941  T
Q  209 cgcaaagcctgaccgtattcatcagcatatcagtgcttctatcagagcttaaaatcctaagcaccgatgttggccgtctaacgctatcatccgcgttgtt 308  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32342940 cgcaaagcatgaccgtattcatcagcatatcagtgcttctatcagagcttaaaatcctaaacaccgatgttggccgtctaacgctatcatccgcgttgtt 32342841  T
Q  309 ttctgatgttgttagcttctctatgacag 337  Q
    ||||||||||||||||||| |||||||||    
T  32342840 ttctgatgttgttagcttcactatgacag 32342812  T

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