View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1655-Insertion-5 (Length: 782)

Name: NF1655-Insertion-5
Description: NF1655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1655-Insertion-5
NF1655-Insertion-5
[»] chr8 (10 HSPs)
chr8 (8-414)||(11345639-11346030)
chr8 (413-603)||(11345219-11345409)
chr8 (600-782)||(11345003-11345184)
chr8 (413-603)||(11338694-11338883)
chr8 (413-603)||(11359097-11359287)
chr8 (419-603)||(11339537-11339721)
chr8 (600-703)||(11339399-11339502)
chr8 (600-697)||(11358965-11359062)
chr8 (600-707)||(11338552-11338659)
chr8 (21-80)||(11359857-11359916)
[»] chr7 (14 HSPs)
chr7 (600-707)||(24031242-24031349)
chr7 (14-74)||(24034934-24034994)
chr7 (465-605)||(24021582-24021722)
chr7 (10-87)||(26236028-26236105)
chr7 (10-94)||(24001381-24001465)
chr7 (415-541)||(24031019-24031145)
chr7 (608-707)||(24021763-24021862)
chr7 (21-87)||(24009576-24009642)
chr7 (480-545)||(23993355-23993420)
chr7 (10-55)||(26217104-26217149)
chr7 (10-55)||(26229354-26229399)
chr7 (12-84)||(15507918-15507990)
chr7 (10-46)||(26255979-26256015)
chr7 (607-670)||(22063636-22063699)
[»] chr4 (6 HSPs)
chr4 (435-554)||(23840465-23840583)
chr4 (10-84)||(23839887-23839961)
chr4 (600-692)||(23840662-23840754)
chr4 (435-554)||(23847339-23847459)
chr4 (613-692)||(23847168-23847247)
chr4 (10-73)||(23847976-23848039)
[»] chr6 (7 HSPs)
chr6 (600-706)||(19746671-19746777)
chr6 (511-603)||(19746812-19746904)
chr6 (603-702)||(33576160-33576259)
chr6 (613-701)||(33568984-33569072)
chr6 (10-55)||(5978209-5978254)
chr6 (613-700)||(5979027-5979114)
chr6 (5-55)||(33568059-33568109)
[»] chr3 (2 HSPs)
chr3 (608-707)||(36340110-36340209)
chr3 (10-55)||(36339297-36339342)
[»] scaffold0707 (2 HSPs)
scaffold0707 (613-702)||(5378-5467)
scaffold0707 (5-55)||(4453-4503)
[»] chr5 (2 HSPs)
chr5 (10-55)||(23085922-23085967)
chr5 (613-684)||(23086782-23086853)
[»] chr1 (1 HSPs)
chr1 (608-677)||(50645491-50645560)


Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-166; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 8 - 414
Target Start/End: Complemental strand, 11346030 - 11345639
Alignment:
Q  8 caattcaaatgcgtgagcaagtcatggaacactctcatctccgatccacccttcgtccaaaaacaccttaaaaagtcatctcagaaccacccacgcctca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11346030 caattcaaatgcgtgagcaagtcatggaacactctcatctccgatccacccttcgtccaaaaacaccttaaaaagtcatctcagaaccacccacgcctca 11345931  T
Q  108 tacccaaagattggaggtgccttattggtccagtccaatccctacctgtagctcgtttgtttaagaatccgttcatcactctttccggcgactattgcca 207  Q
    ||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11345930 tactcgaagattagaggtgccttattggtctagtccaatccctacctgtagctcgtttgtttaagaattcgttcatcactctttccggcgactattgcca 11345831  T
Q  208 tggctgcactttttataactgcggctgccaggttgttaattcttgcaacgaattactgtgctttctgatcagttcatataacacagggtatcgtaagtat 307  Q
    ||| ||||||                |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  11345830 tggttgcact---------------ggccaggttgttaattcttgcaacggattactgtgctttctgatcagttcatataacacaaggtattgtaagtat 11345746  T
Q  308 tggttttgtgtatgcaaccctgccatgagaacaggaactagagcttttgggactcgagaccatcagctatgcggtttgaatttcagtgttggaactgaac 407  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||     
T  11345745 tggtttcgtgtatgcaaccctgccatgagaacaggaactagagcgtttgggactcgagacagtcagctatgcggtttgaatttcagtgttggaactgaaa 11345646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 413 - 603
Target Start/End: Complemental strand, 11345409 - 11345219
Alignment:
Q  413 ggtgtgtatttgagaggcactatttactggttggctattgaaaactatttttatcctttttatgatcacaagtctattactcatgttgatcaattcaaga 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11345409 ggtgtgtatttgagaggcactatttactggttggctattgaaaactatttttatcctttttatgaacacaagtctattactcatgttgatcaattcaaga 11345310  T
Q  513 ttgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatgaggtcccgagctttcagccaactcttca 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11345309 ttgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatgaggtcccaagctttcagccaactcttca 11345219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 600 - 782
Target Start/End: Complemental strand, 11345184 - 11345003
Alignment:
Q  600 ttcaaggaaactcaatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatttagaattgactactttaatcttcaaatgc 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11345184 ttcaaggaaactcaatttgttatatggcaaatggaagagtttggatttcaagaatcttggactcaattatttagaattgactactttaatcttcaaatgc 11345085  T
Q  700 ataacctttcttcagttagacggggtatcctttcttcaattagacgggggtattccattgttgttgccacggtacctttctgg 782  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  11345084 ataacctttcttcaattagacggggtatcctttcttcaattagac-ggggtattccattgttgttgccatggtacctttctgg 11345003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 413 - 603
Target Start/End: Complemental strand, 11338883 - 11338694
Alignment:
Q  413 ggtgtgtatttgagaggcactatttactggttggctattgaaaactatttttatcctttttatgatcacaagtctattactcatgttgatcaattcaaga 512  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11338883 ggtgtatatttgagaggcactatttactggttggctattcaaaactatttttatcctttttat-atcacaagtctattactcatgttgatcaattcaaga 11338785  T
Q  513 ttgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatgaggtcccgagctttcagccaactcttca 603  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||  |||||||||||||||||||    
T  11338784 ttgtttcccttgatctttcaactgagacatacatgcaattttgtttgccttctggtcttgatgagatcccatgctttcagccaactcttca 11338694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 413 - 603
Target Start/End: Complemental strand, 11359287 - 11359097
Alignment:
Q  413 ggtgtgtatttgagaggcactatttactggttggctattgaaaactatttttatcctttttatgatcacaagtctattactcatgttgatcaattcaaga 512  Q
    |||||||||||||| ||||||||||||| ||| |||||| | |||||||||||||||||||||| | |   | ||||||||||||||||||| |||||||    
T  11359287 ggtgtgtatttgagcggcactatttactagttagctattcagaactatttttatcctttttatggttatggggctattactcatgttgatcagttcaaga 11359188  T
Q  513 ttgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatgaggtcccgagctttcagccaactcttca 603  Q
    |||| |||||||| |||||||||||| |||||||||||||||   |||||| ||||||||||||||||||  ||||| |||||||||||||    
T  11359187 ttgtctcccttgatctttcaactgaggcatacatgcaattttcactgccttctggttttgatgaggtcccatgcttttagccaactcttca 11359097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 419 - 603
Target Start/End: Complemental strand, 11339721 - 11339537
Alignment:
Q  419 tatttgagaggcactatttactggttggctattgaaaactatttttatcctttttatgatcacaagtctattactcatgttgatcaattcaagattgttt 518  Q
    ||||| || |||||||||||||||||||||||| | || |||||||| |||||| ||||| |  |||||||||||| |||||||||||||||||| ||||    
T  11339721 tatttaagtggcactatttactggttggctattcagaattatttttacccttttcatgattatgagtctattactcgtgttgatcaattcaagatggttt 11339622  T
Q  519 cccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatgaggtcccgagctttcagccaactcttca 603  Q
    ||||||| || |||| ||||||||| |||||||||||||| |||| ||||||||||||||| ||   ||||||||||||||||||    
T  11339621 cccttgatctatcaattgagacatatatgcaattttgtttaccttctggttttgatgaggtaccctactttcagccaactcttca 11339537  T

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Target: chr8; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 600 - 703
Target Start/End: Complemental strand, 11339502 - 11339399
Alignment:
Q  600 ttcaaggaaactcaatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatttagaattgactactttaatcttcaaatgc 699  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  11339502 ttcaaggaaactcaatttgttatatggcaaatgagcgagtttggatttcaagaatcttggactcaattatttagaattgactactttaatcttgaaatgc 11339403  T
Q  700 ataa 703  Q
    ||||    
T  11339402 ataa 11339399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 600 - 697
Target Start/End: Complemental strand, 11359062 - 11358965
Alignment:
Q  600 ttcaaggaaactcaatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatttagaattgactactttaatcttcaaat 697  Q
    ||||||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||    
T  11359062 ttcaaggaaactcaatttgttatatggcaaatgaaagagatgggatttcaagaatcttggactcaattatttagaattgactactctaatcttgaaat 11358965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 600 - 707
Target Start/End: Complemental strand, 11338659 - 11338552
Alignment:
Q  600 ttcaaggaaactcaatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatttagaattgactactttaatcttcaaatgc 699  Q
    |||||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||  ||||||||||||| || |||||||||||||| | || |    
T  11338659 ttcaagcaaactgaatttgttatatggcaaatgaaagagtttggatttcaagaatcttggtctcaattatttagagttaactactttaatcttgatattc 11338560  T
Q  700 ataacctt 707  Q
    ||||||||    
T  11338559 ataacctt 11338552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 11359916 - 11359857
Alignment:
Q  21 tgagcaagtcatggaacactctcatctccgatccacccttcgtccaaaaacaccttaaaa 80  Q
    |||||||||||||||||||||||||||| |||||  |||||||||||||||| |||||||    
T  11359916 tgagcaagtcatggaacactctcatctctgatccgaccttcgtccaaaaacaacttaaaa 11359857  T

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Target: chr7 (Bit Score: 56; Significance: 9e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 600 - 707
Target Start/End: Original strand, 24031242 - 24031349
Alignment:
Q  600 ttcaaggaaactcaatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatttagaattgactactttaatcttcaaatgc 699  Q
    |||||| ||||| ||||||| |||||| ||||| | ||||||||| ||| ||| ||||||| |||| |||||||||||| ||||||||||||| ||||||    
T  24031242 ttcaagaaaactgaatttgtcatatggaaaatgaatgagtttggagttcaagagtcttggactcaactatttagaattggctactttaatcttgaaatgc 24031341  T
Q  700 ataacctt 707  Q
    ||||||||    
T  24031342 ataacctt 24031349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 24034934 - 24034994
Alignment:
Q  14 aaatgcgtgagcaagtcatggaacactctcatctccgatccacccttcgtccaaaaacacc 74  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  24034934 aaatgcgtgagcaagtcatggaacgctctcatctccgatccactcttcgtccaaaaacacc 24034994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 465 - 605
Target Start/End: Original strand, 24021582 - 24021722
Alignment:
Q  465 atcctttttatgatcacaagtctattactcatgttgatcaattcaagattgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttt 564  Q
    |||||| ||||||| || ||  ||||||||||||| ||| ||||  ||||||||||||||| ||||| || ||||||  |||||||||||  |||||||     
T  24021582 atccttcttatgattacgagattattactcatgttaatcgattcgtgattgtttcccttgatctttcgaccgagacaaccatgcaatttttgttgccttc 24021681  T
Q  565 tggttttgatgaggtcccgagctttcagccaactcttcaag 605  Q
     | |||||||||||| ||  | |||||||||||||||||||    
T  24021682 cgattttgatgaggtgccatgttttcagccaactcttcaag 24021722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 26236028 - 26236105
Alignment:
Q  10 attcaaatgcgtgagcaagtcatggaacactctcatctccgatccacccttcgtccaaaaacaccttaaaaagtcatc 87  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||| | || || ||||| ||||||||    
T  26236028 attcaaatgcgtgagcaagtcctggaacactctcatctctgatccaaccttcgtcgacaaccatcttaagaagtcatc 26236105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 24001381 - 24001465
Alignment:
Q  10 attcaaatgcgtgagcaagtcatggaacactctcatctccgatccacccttcgtccaaaaacaccttaaaaagtcatctcagaac 94  Q
    |||||||||  |||||||||||||||||||| |||||||||||||| |||| |||||||  || ||||| |||||||| ||||||    
T  24001381 attcaaatgtctgagcaagtcatggaacactttcatctccgatccaacctttgtccaaatgcatcttaagaagtcatcacagaac 24001465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 415 - 541
Target Start/End: Original strand, 24031019 - 24031145
Alignment:
Q  415 tgtgtatttgagaggcactatttactggttggctattgaaaactatttttatcctttttatgatcacaagtctattactcatgttgatcaattcaagatt 514  Q
    |||| ||||||| |||||| ||||||  ||||||||| | ||||||||| ||| || ||||||| |  || ||||||||||||||||||| |||  ||||    
T  24031019 tgtgcatttgagtggcactgtttactcattggctattcagaactattttaatcgttgttatgattatgagactattactcatgttgatcacttcgtgatt 24031118  T
Q  515 gtttcccttgacctttcaactgagaca 541  Q
     |||||||||| ||||| || ||||||    
T  24031119 atttcccttgatctttcgaccgagaca 24031145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 608 - 707
Target Start/End: Original strand, 24021763 - 24021862
Alignment:
Q  608 aactcaatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatttagaattgactactttaatcttcaaatgcataacctt 707  Q
    |||| |||||||||| ||| ||||| | ||||||||| ||| ||| ||||||| || | ||||||||||||  |||||| ||||| ||||||||||||||    
T  24021763 aactgaatttgttatttggaaaatgaatgagtttggaattcgagagtcttggactcgactatttagaattggatactttgatcttgaaatgcataacctt 24021862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 24009576 - 24009642
Alignment:
Q  21 tgagcaagtcatggaacactctcatctccgatccacccttcgtccaaaaacaccttaaaaagtcatc 87  Q
    |||||||||||||||||||| ||||||||||||||  ||| |||||||  || ||||| ||||||||    
T  24009576 tgagcaagtcatggaacactttcatctccgatccaaactttgtccaaatgcatcttaagaagtcatc 24009642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 545
Target Start/End: Original strand, 23993355 - 23993420
Alignment:
Q  480 acaagtctattactcatgttgatcaattcaagattgtttcccttgacctttcaactgagacataca 545  Q
    |||||||||||| ||||| ||| |||||  ||||| |||| |||||||||||||| ||||||||||    
T  23993355 acaagtctattattcatgctgagcaatttcagattctttcacttgacctttcaacggagacataca 23993420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 26217104 - 26217149
Alignment:
Q  10 attcaaatgcgtgagcaagtcatggaacactctcatctccgatcca 55  Q
    ||||||| |||||||||| || ||||||||||||||||||||||||    
T  26217104 attcaaaagcgtgagcaaatcctggaacactctcatctccgatcca 26217149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 26229354 - 26229399
Alignment:
Q  10 attcaaatgcgtgagcaagtcatggaacactctcatctccgatcca 55  Q
    ||||||| |||||||||| || ||||||||||||||||||||||||    
T  26229354 attcaaaagcgtgagcaaatcctggaacactctcatctccgatcca 26229399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 15507918 - 15507990
Alignment:
Q  12 tcaaatgcgtgagcaagtcatggaacactctcatctccgatccacccttcgtccaaaaacaccttaaaaagtc 84  Q
    |||||||| ||||||||||||||||  ||||||| || |||||| ||||| || |||| |||||||| |||||    
T  15507918 tcaaatgcttgagcaagtcatggaaagctctcatatctgatccaaccttcatcgaaaagcaccttaagaagtc 15507990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 26255979 - 26256015
Alignment:
Q  10 attcaaatgcgtgagcaagtcatggaacactctcatc 46  Q
    ||||||||||||||||||||| |||||||||||||||    
T  26255979 attcaaatgcgtgagcaagtcttggaacactctcatc 26256015  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 670
Target Start/End: Original strand, 22063636 - 22063699
Alignment:
Q  607 aaactcaatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatt 670  Q
    ||||||| |||||||||||||||||| | || |||||||||| ||| ||||||| ||| |||||    
T  22063636 aaactcattttgttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttatt 22063699  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 435 - 554
Target Start/End: Original strand, 23840465 - 23840583
Alignment:
Q  435 tttactggttggctattgaaaactatttttatcctttttatgatcacaagtctattactcatgttgatcaattcaagattgtttcccttgacctttcaac 534  Q
    ||||||||||||||||  ||||||||||| |||||||||||||| |    | ||||||||||||||||||| ||| |||| |||||||||| ||||| ||    
T  23840465 tttactggttggctatgcaaaactatttt-atcctttttatgataaggcatgtattactcatgttgatcaactcatgattctttcccttgatctttcgac 23840563  T
Q  535 tgagacatacatgcaatttt 554  Q
     ||||||||||| |||||||    
T  23840564 cgagacatacatccaatttt 23840583  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 23839887 - 23839961
Alignment:
Q  10 attcaaatgcgtgagcaagtcatggaacactctcatctccgatccacccttcgtccaaaaacaccttaaaaagtc 84  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||  ||| ||||| ||||||| |||||    
T  23839887 attcaaatgtgtgagcaagtcatggaacactctcatctccgatccagcctatgtcaaaaaataccttaacaagtc 23839961  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 600 - 692
Target Start/End: Original strand, 23840662 - 23840754
Alignment:
Q  600 ttcaaggaaactcaatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatttagaattgactactttaatctt 692  Q
    |||||| ||||| ||||||||||||| |||| | || |||||||  |||  || ||||||| |||||||||||||||||||||||||||||||    
T  23840662 ttcaagaaaactgaatttgttatatgacaaaggaaatagtttggggttcaggagtcttggactcaattatttagaattgactactttaatctt 23840754  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 435 - 554
Target Start/End: Complemental strand, 23847459 - 23847339
Alignment:
Q  435 tttactggttggctattgaaaactattttt-atcctttttatgatcacaagtctattactcatgttgatcaattcaagattgtttcccttgacctttcaa 533  Q
    |||| |||||||||||  |||||||||||| |||||||||||||| |    | ||||||||||||||||||| ||  |||| |||||||||| ||||| |    
T  23847459 tttattggttggctatgcaaaactattttttatcctttttatgatgagggatgtattactcatgttgatcaactcgtgattctttcccttgatctttcga 23847360  T
Q  534 ctgagacatacatgcaatttt 554  Q
    | ||||||||||| |||||||    
T  23847359 ccgagacatacatccaatttt 23847339  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 613 - 692
Target Start/End: Complemental strand, 23847247 - 23847168
Alignment:
Q  613 aatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatttagaattgactactttaatctt 692  Q
    ||||||||| |||||||||| |||||||| |  ||| ||| |||| || ||| |||||||||||||||||||||||||||    
T  23847247 aatttgttacatggcaaatgaaagagtttagggttcaagagtcttagactcagttatttagaattgactactttaatctt 23847168  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 23848039 - 23847976
Alignment:
Q  10 attcaaatgcgtgagcaagtcatggaacactctcatctccgatccacccttcgtccaaaaacac 73  Q
    |||||| || ||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||    
T  23848039 attcaattgtgtgagcaagtcgtggaacactctcatctccgatccaacctttgtcaaaaaacac 23847976  T

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Target: chr6 (Bit Score: 51; Significance: 8e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 600 - 706
Target Start/End: Complemental strand, 19746777 - 19746671
Alignment:
Q  600 ttcaaggaaactcaatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatttagaattgactactttaatcttcaaatgc 699  Q
    ||||||| |||| |||||||||||||||||||| |  |||||||| ||| ||| ||||||| |   ||||||||||||||||||||||||||| |||||     
T  19746777 ttcaagggaactgaatttgttatatggcaaatgaagaagtttggagttcaagagtcttggactttgttatttagaattgactactttaatcttgaaatgt 19746678  T
Q  700 ataacct 706  Q
    |||||||    
T  19746677 ataacct 19746671  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 511 - 603
Target Start/End: Complemental strand, 19746904 - 19746812
Alignment:
Q  511 gattgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatgaggtcccgagctttcagccaactcttca 603  Q
    ||||||||||||||| ||||| |||||||||||||  |||||||   |||| |||||||||||||| |||||   ||||||||||||||||||    
T  19746904 gattgtttcccttgatctttcgactgagacatacacacaatttttgctgccatttggttttgatgaagtcccacactttcagccaactcttca 19746812  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 603 - 702
Target Start/End: Original strand, 33576160 - 33576259
Alignment:
Q  603 aaggaaactcaatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatttagaattgactactttaatcttcaaatgcata 702  Q
    |||| |||| ||||||||||||||   ||| | ||||||||| ||| ||| ||||||| ||| |||||||||||||| ||| ||||||||||||| ||||    
T  33576160 aagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaattgaatacgttaatcttcaaatacata 33576259  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 613 - 701
Target Start/End: Original strand, 33568984 - 33569072
Alignment:
Q  613 aatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatttagaattgactactttaatcttcaaatgcat 701  Q
    ||||||| |||||| | ||| | ||||||||| |||  || ||||||||||| |||||||||||||| ||  |||||||||||||||||    
T  33568984 aatttgtcatatggaagatgaatgagtttggagttcacgagtcttggagtcagttatttagaattgaatatgttaatcttcaaatgcat 33569072  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 5978209 - 5978254
Alignment:
Q  10 attcaaatgcgtgagcaagtcatggaacactctcatctccgatcca 55  Q
    |||||| ||||||| ||||||||||||||||||||||||| |||||    
T  5978209 attcaagtgcgtgaacaagtcatggaacactctcatctccaatcca 5978254  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 700
Target Start/End: Original strand, 5979027 - 5979114
Alignment:
Q  613 aatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatttagaattgactactttaatcttcaaatgca 700  Q
    |||||||||||||||  ||| | ||||||||| | | ||| ||||||| ||| ||||||||| |||| ||  ||||||||||||||||    
T  5979027 aatttgttatatggctgatgaaggagtttggagtccaagagtcttggactcagttatttagatttgaatatgttaatcttcaaatgca 5979114  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 33568059 - 33568109
Alignment:
Q  5 acacaattcaaatgcgtgagcaagtcatggaacactctcatctccgatcca 55  Q
    ||||||||||| ||||| ||||| ||||||||| | |||||||||||||||    
T  33568059 acacaattcaagtgcgtaagcaaatcatggaactcgctcatctccgatcca 33568109  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 608 - 707
Target Start/End: Original strand, 36340110 - 36340209
Alignment:
Q  608 aactcaatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatttagaattgactactttaatcttcaaatgcataacctt 707  Q
    |||| ||||||| |||||||| ||| | |||||||||| || ||| ||||||| ||| |||||||||||| | ||| ||||||||||||| |||||||||    
T  36340110 aactgaatttgtgatatggcagatgaaggagtttggatctcaagagtcttggactcagttatttagaattaaatacattaatcttcaaatccataacctt 36340209  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 36339297 - 36339342
Alignment:
Q  10 attcaaatgcgtgagcaagtcatggaacactctcatctccgatcca 55  Q
    |||||| || ||||||||||||||||||||||||||||| ||||||    
T  36339297 attcaagtgtgtgagcaagtcatggaacactctcatctcagatcca 36339342  T

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Target: scaffold0707 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 613 - 702
Target Start/End: Original strand, 5378 - 5467
Alignment:
Q  613 aatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatttagaattgactactttaatcttcaaatgcata 702  Q
    ||||||| |||||| | ||| | ||||||||| |||  || ||||||||||| |||||||||||||| ||| ||||||||||||| ||||    
T  5378 aatttgtcatatggaagatgaatgagtttggagttcacgagtcttggagtcagttatttagaattgaatacgttaatcttcaaatacata 5467  T

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Target: scaffold0707; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 4453 - 4503
Alignment:
Q  5 acacaattcaaatgcgtgagcaagtcatggaacactctcatctccgatcca 55  Q
    ||||||||||| ||||| ||||| ||||||||| | |||||||||||||||    
T  4453 acacaattcaagtgcgtaagcaaatcatggaactcgctcatctccgatcca 4503  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 23085922 - 23085967
Alignment:
Q  10 attcaaatgcgtgagcaagtcatggaacactctcatctccgatcca 55  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||    
T  23085922 attcaaatgcgtaagcaagtcatggaacactctcgtctccgatcca 23085967  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 684
Target Start/End: Original strand, 23086782 - 23086853
Alignment:
Q  613 aatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatttagaattgactact 684  Q
    |||||||||||||||| ||| | ||||||||| ||| ||| ||||||| ||| || |||||||| |||||||    
T  23086782 aatttgttatatggcagatgaaggagtttggagttcaagagtcttggactcagttgtttagaatcgactact 23086853  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 677
Target Start/End: Complemental strand, 50645560 - 50645491
Alignment:
Q  608 aactcaatttgttatatggcaaatggaagagtttggatttctagaatcttggagtcaattatttagaatt 677  Q
    |||||| |||||||| ||||||||| | || |||||| ||| ||| ||||||| ||||||||||| ||||    
T  50645560 aactcattttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattatttaaaatt 50645491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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