View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16550_high_2 (Length: 365)
Name: NF16550_high_2
Description: NF16550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16550_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 28783986 - 28783646
Alignment:
| Q |
16 |
catagtgcaacagctgcaccttgtcctgctcatgatggcctgcaaaacaccaaaattgtcatcaagtcaaaatctgatgacaaacacaccctaagtactg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28783986 |
catagtgcaacagctgcaccttgtcctgctcatgatggcctgcaaaacaccaaaattgtcatcaagtcaaaatctgatgacaaacacaccctaagtactg |
28783887 |
T |
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| Q |
116 |
ctgctgctggtaaactcaaattttcatcagcaacatgtacctccaaattcttttggcctctcttcaaacatcctctttttcctaagcttcctcatcctga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28783886 |
ctgctgctggtaaactcaaattttcatcagcaacatgtacctccaaattcttttggcctctcttcaaacatcctctttttcctaagcttcctcatcctga |
28783787 |
T |
|
| Q |
216 |
tttacctcaatttccccctaaagtttttccaacatttccaccaaagattttccataaacaccctctttttcctcctgttcctatctacaagaaacctccc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28783786 |
tttacctcaatttccccctaaagtttttccaacatttccaccaaagattttccataaacaccctctttttcctcctgttcctatctacaagaaacctcca |
28783687 |
T |
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| Q |
316 |
tttcctcatattcctatttacaaacctccctttcctcatat |
356 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28783686 |
ttttctcatattcctatttacaaacctccctttcctcatat |
28783646 |
T |
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