View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16550_high_5 (Length: 280)
Name: NF16550_high_5
Description: NF16550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16550_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 42720372 - 42720103
Alignment:
| Q |
1 |
aatgttgctctctttcgtagcatcaagtggttggactttggacagtagcttttattcatgtctataagttatgaaca-----ctctgtaagctgatcaac |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42720372 |
aatgttgctctctttcgtagcatcaagtggttggactttggacagtagcttttattcatgtctataagttatgaacaactttctctgtaagctgatcaac |
42720273 |
T |
|
| Q |
96 |
taattttccataaacttcactttcaagttttggccgaaagtgcacacagaactcattatgnnnnnnnnacaagtgtaagcaaaagcatctacgtgcatac |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42720272 |
taattttccataaacttcactttcaagttttggccgaaagtgcacacagaactcattatg-tttttttacaagtgtaagcaaaagcatctacgtgcatac |
42720174 |
T |
|
| Q |
196 |
taatagcaaagtcccactttaagatctacttgacaaaaaagtcaaattaacaatactttaatgattcatct |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42720173 |
taatagcaaagtcccactttaagatctacttgacaaaaaagtcaaattaacaatactttaatgattcatct |
42720103 |
T |
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