View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16550_high_6 (Length: 275)
Name: NF16550_high_6
Description: NF16550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16550_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 42720388 - 42720575
Alignment:
| Q |
1 |
ccaatgtattttcagggaaaataagtcaatgtattacctcctagcattgcataaaccaatcactttttaatttttgaagggtaaaccagtcacttttaac |
100 |
Q |
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| T |
42720388 |
ccaatgtattttcagggaaaataagtcaatgtattacctcctagcattgcataaaccaatcactttttaatttttgaagggtaaaccagtcacttttaac |
42720487 |
T |
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| Q |
101 |
atctagggaactactagggcactattc--aagatatggaccacatccaaaagtgtcaattagacactcttttatgagtgaatgtataggccataatg |
195 |
Q |
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| T |
42720488 |
atctagggaactac---------atccaaaagatatggaccacatccaaaagtgtcaattagacactcttttatgagtgaatgtataggccataatg |
42720575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 42720602 - 42720671
Alignment:
| Q |
192 |
aatgcaagaaagtattattggctattctcctttagtaaattctctgaaagtgtcaagttgaagagatatt |
261 |
Q |
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| T |
42720602 |
aatgcaagaaagtattattggcgattctcctttagtaaattctctgaaagtgttaagttgaagagatatt |
42720671 |
T |
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