View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16550_low_1 (Length: 553)
Name: NF16550_low_1
Description: NF16550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16550_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 13 - 538
Target Start/End: Original strand, 38784205 - 38784731
Alignment:
| Q |
13 |
catcaccaaagacacaatccttcaaagagaaacacaaagggagattaagagtgttagagaaaatgttggacaaagaattactttgattaaagagagggca |
112 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38784205 |
catcaccaaagaaacaatccttcaaagagaaacacaaagggagattaagagtgttagagaaaatgttggacaaagaattactttgattaaagagagggca |
38784304 |
T |
|
| Q |
113 |
atgtcaaggcataggagacatggaggaagacttagaaacatgtaatcaacaaaggaggattatagaggaagaataactttggaagaaaaagaaacttaaa |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||| |
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| T |
38784305 |
atgtcaaggcataggagacatggaggaagacttagaaacatgtaatcaacaaaggaggattagagaggaagaataactttggaagaacaagaaatttaaa |
38784404 |
T |
|
| Q |
213 |
attcctaaattttaaggaaaggttgatctagagaaacatacttatattcagagctaaaattggaacaaatatttagttaccatgaagttagggaagaatg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
38784405 |
attcctaaattttaaggaaaggttgatctagagaaacatacttatattcagagctaaaattggaacaaatatttagttaccatgaatttagggaggaatg |
38784504 |
T |
|
| Q |
313 |
gaaagtgaagttagcaactttgaagttcacaaatcatggtggaatcaacaacaaaaagaaagagtaaggtgtagagcaagacctattgatgcttgagaaa |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38784505 |
gaaagtgaagttagcaactttgaagttcacaaatcatggtggaatcaacaacaaaaagaaagagtaaggtgaagagcaagacctattgatgcttgagaaa |
38784604 |
T |
|
| Q |
413 |
atttaccggttgtgttaagaaatagatatgttacaaatcattaccatataaacttgcataataagctccaaaaacatactcaaggagtat-aaatgttga |
511 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38784605 |
atttaccggttgtgttaagaaatagatatgttacagatcattaccatataaacttgcataataagctccaaaaacatactcaaggagtataaaatgttga |
38784704 |
T |
|
| Q |
512 |
agaatattacacaaatttggaagtagc |
538 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
38784705 |
agaatattacacaaatttggaagtagc |
38784731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 202 - 538
Target Start/End: Complemental strand, 38742132 - 38741795
Alignment:
| Q |
202 |
agaaacttaaaattcctaaattttaaggaaaggttgatctagagaaacatacttatattcagagctaaaattggaacaaatatttagttaccatgaagtt |
301 |
Q |
| |
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|||||||| |||||| ||| |||||||| || |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38742132 |
agaaacttgaaattcttaatttttaagggaatgttgatttagagaaacatacttaaattcagagctaaaagtggaacaaatatttagttaccatgaagtt |
38742033 |
T |
|
| Q |
302 |
agggaagaatggaaagtgaagttagcaactttgaagttcacaaatcatggtggaatcaacaacaaaaagaaagagtaaggtgtagagcaagacctattga |
401 |
Q |
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| T |
38742032 |
agggaagaatggaaagtgaagttagcaactttgaagttcacaaatcatggtggaatcaacaacaaaaagaaagagtaaggtgtagagcaagacctattga |
38741933 |
T |
|
| Q |
402 |
tgcttgagaaaatttaccggttgtgttaagaaatagatatgttacaaatcattaccatataaacttgcataataagctccaaaaacatactcaaggagta |
501 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38741932 |
tgcttgagaaaatttaccagttgtgttaagaaatagatatgttacaaatcattaccatataaacttgcataataagctccaaaaacatactcaaggagta |
38741833 |
T |
|
| Q |
502 |
t-aaatgttgaagaatattacacaaatttggaagtagc |
538 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||| |
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| T |
38741832 |
taaaatgttgaagaatattacacaaatttggaagtagc |
38741795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 38742263 - 38742127
Alignment:
| Q |
15 |
tcaccaaagacacaatccttcaaagagaaacacaaagggagattaagagtgttagagaaaatgttggacaaagaattactttgattaaagagagggcaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38742263 |
tcaccaaagacacaatccttcaaagagaaacacaaagggagattaagagtgttagagaaaatgttggacaaagaattactttgattaaagagagggcaat |
38742164 |
T |
|
| Q |
115 |
gtcaaggcataggagacatggaggaagacttagaaac |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
38742163 |
gtcaaggcataggagacatggaggaagacttagaaac |
38742127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 119 - 271
Target Start/End: Original strand, 38790534 - 38790694
Alignment:
| Q |
119 |
aggcataggagacatggaggaagacttagaaacatgtaatcaacaaaggaggatta-------tag--aggaagaataactttggaagaaaaagaaactt |
209 |
Q |
| |
|
||||||||||||||| ||| |||||||| |||||||||||||| |||||| ||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
38790534 |
aggcataggagacattgagaaagacttaaaaacatgtaatcaagaaaggatgattagggtctctagggaggaagaataactttggaagaaaaagaaactt |
38790633 |
T |
|
| Q |
210 |
aaaattcctaaattttaaggaaaggttgatctagagaaacatacttatattcagagctaaaa |
271 |
Q |
| |
|
||| ||||| | |||||||| ||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
38790634 |
aaa-ttccttacttttaagggaaggttgatatagagaaacatacttatatttagagctaaaa |
38790694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 38790355 - 38790465
Alignment:
| Q |
13 |
catcaccaaagacacaatccttcaaagagaaacacaaagggaga-------ttaagagtgttagagaaaatgttggacaaagaattactttgattaaaga |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
38790355 |
catcaccaaagacacaatccttcaaaaagaaacacaaagggagattaagacttaagagtgttagtgaaaatgttggacaaagaattactttggttaaaga |
38790454 |
T |
|
| Q |
106 |
gagggcaatgt |
116 |
Q |
| |
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|||| ||||| |
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| T |
38790455 |
aagggtaatgt |
38790465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 132 - 346
Target Start/End: Complemental strand, 30961573 - 30961364
Alignment:
| Q |
132 |
atggaggaagacttagaaac-atgtaatcaacaaaggaggattatagaggaagaataactttggaagaaaaagaaacttaaaattcctaaattttaagga |
230 |
Q |
| |
|
||||||||||||||||||| || ||||||| |||||| || |||||| |||||||||||||||||||||||||| |||||||||| |||||| | |
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|
| T |
30961573 |
atggaggaagacttagaaattatataatcaagaaagga----tagggaggaaaaataactttggaagaaaaagaaacttgaaattcctaatttttaaagg |
30961478 |
T |
|
| Q |
231 |
aaggttgatctagagaaacatacttatattcagagctaaaattggaacaaatatttagttaccatgaagtta-gggaagaatggaaagtgaagttagcaa |
329 |
Q |
| |
|
||||||||||| |||||||| |||| ||| ||||| | || ||||||||| |||||||||||| ||||||| |||| ||| |||||||||||||||||| |
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|
| T |
30961477 |
aaggttgatct--agaaacatgcttacattgagagcaataagtggaacaaa-atttagttaccacgaagttaggggaggaaaggaaagtgaagttagcaa |
30961381 |
T |
|
| Q |
330 |
ctttgaagttcacaaat |
346 |
Q |
| |
|
|||| ||||||||||| |
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| T |
30961380 |
cttttgagttcacaaat |
30961364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 413
Target Start/End: Complemental strand, 30960985 - 30960935
Alignment:
| Q |
363 |
acaaaaagaaagagtaaggtgtagagcaagacctattgatgcttgagaaaa |
413 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||| | |||||||| |
|
|
| T |
30960985 |
acaaaaagagagagtaaggtgtggagcaagacctattgattcatgagaaaa |
30960935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 34081577 - 34081610
Alignment:
| Q |
187 |
aactttggaagaaaaagaaacttaaaattcctaa |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
34081577 |
aactttggaagaaaaagaaacttaaaattcctaa |
34081610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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