View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16550_low_11 (Length: 229)
Name: NF16550_low_11
Description: NF16550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16550_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 5132772 - 5132567
Alignment:
| Q |
9 |
acatcatctcttttctcccaaccaaagatgccattagcacttgtgtcttatctaaacaatggaaacaccgttggactttccttaccaaactctccttact |
108 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5132772 |
acatcatctcttttctcccaaccaaagatgccgttcgcacttgtgtcttatctaaacaatggaaacaccgttggactttccttaccaaactctccttact |
5132673 |
T |
|
| Q |
109 |
tgatcatcatgatccttccccttcttccaactttgtaagctttgttaccagagcactgcttcttactcgcacggaaacaatttccctttccctctcaggt |
208 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5132672 |
tgatcatcatgattcttccccttcttccaactttgtaagctttgttaccagagcactgcttcttactcgcacggaaacaatttccctttccctctcaggt |
5132573 |
T |
|
| Q |
209 |
caatac |
214 |
Q |
| |
|
|||||| |
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|
| T |
5132572 |
caatac |
5132567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 1079034 - 1079239
Alignment:
| Q |
9 |
acatcatctcttttctcccaaccaaagatgccattagcacttgtgtcttatctaaacaatggaaacaccgttggactttccttaccaaactctccttact |
108 |
Q |
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|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1079034 |
acatcatctcttttctcccaaccaaagatgccgttcgcacttgtgtcttatctaaacaatggaaacaccgttggactttccttaccaaactctccttact |
1079133 |
T |
|
| Q |
109 |
tgatcatcatgatccttccccttcttccaactttgtaagctttgttaccagagcactgcttcttactcgcacggaaacaatttccctttccctctcaggt |
208 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1079134 |
tgatcatcatgattcttccccttcttccaactttgtaagttttgttaccagagcactgcttcttactcgcacggaaacaatttccctttccctctcaggt |
1079233 |
T |
|
| Q |
209 |
caatac |
214 |
Q |
| |
|
|||||| |
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|
| T |
1079234 |
caatac |
1079239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 1200168 - 1200269
Alignment:
| Q |
15 |
tctcttttctcccaaccaaagatgccattagcacttgtgtcttatctaaacaatggaaacaccgttggactttccttaccaaactctccttacttgatca |
114 |
Q |
| |
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||||||| || ||||||||||| || || |||||| ||||||||| ||| |||| ||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
1200168 |
tctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggactttcctcaccaaactctccttacacgatca |
1200267 |
T |
|
| Q |
115 |
tc |
116 |
Q |
| |
|
|| |
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|
| T |
1200268 |
tc |
1200269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 1213497 - 1213608
Alignment:
| Q |
15 |
tctcttttctcccaaccaaagatgccattagcacttgtgtcttatctaaacaatggaaacaccgttggactttccttaccaaactctccttacttgatca |
114 |
Q |
| |
|
|||||||||||||||||||||| || || |||||| | |||||||||| ||| ||||||| ||||||| || ||||||||||| |||| ||||| |
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| T |
1213497 |
tctcttttctcccaaccaaagacgctgttcgcacttctatcttatctaagagttgggaacaccgctggacttcactcaccaaactctctttacacgatca |
1213596 |
T |
|
| Q |
115 |
tcatgatccttc |
126 |
Q |
| |
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| ||||| |||| |
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|
| T |
1213597 |
ttatgattcttc |
1213608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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